Locus 6278

Sequence ID X_DroMel_CAF1
Location 15,945,065 – 15,945,185
Length 120
Max. P 0.664507
window10228

overview

Window 8

Location 15,945,065 – 15,945,185
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.50
Mean single sequence MFE -32.83
Consensus MFE -31.06
Energy contribution -31.38
Covariance contribution 0.31
Combinations/Pair 1.15
Mean z-score -1.36
Structure conservation index 0.95
SVM decision value 0.28
SVM RNA-class probability 0.664507
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15945065 120 - 22224390
UCCUCCGGCUAUCUACACAUACUUUAACUGCCAAAUGGGUAGUGAGCAAAGGUUGUGGCAAAGUUUUGCCCAAAGACGCCUCUCGUUCGACCCUUUGCUUUUCUCAAAGGUCAAGCUUAA
......((((((((............((((((.....))))))((((((((((((.(((((....)))))))).((((.....))))....))))))))).......))))..))))... ( -32.30)
>DroSec_CAF1 13567 118 - 1
--CUCCGGCUAUCUACACAUCCUUUAACUGCCAAACGGGUAGUGAGCAUAGGUUGUGGCAAAGUUUUGCCAAAAGACGCCUCUCGCUCGACCCUUUGCUUUUCUCAAAGAUCAAGCUUAA
--....((((((((............((((((.....))))))(((((..(((((((((((....))))))......((.....)).)))))...))))).......))))..))))... ( -30.50)
>DroSim_CAF1 8122 118 - 1
--CUCCGGCUAUUUACACAUCCUUUAACUGCCAAACGGGUAGUGAGCAUAGGUUGUGGCAAAGUUUUGCCAAAAGACGUCUCUCGCUCGACCCUUUGCUUUUCUCAAAGGUCAAGCUUAA
--....(((.((((.((((.(((...((((((.....))))))......))).))))...))))...)))..............(((.((((.((((.......)))))))).))).... ( -32.10)
>DroEre_CAF1 12755 120 - 1
UCCUCCGGCUAUCUACACAUCCUUUAGCUGCCAAGUGGGUAGUGCGCGAAGGUUGUGGCAAAGUUGUGCCAAAAGACGCCUCUCGCUCGACCCUUUGCUUUCCUCAGAGGUCAAGCUCAC
......(((..(((..(((.(((((.((((((.....))))))....))))).)))((((......))))...))).)))....(((.((((.((((.......)))))))).))).... ( -36.40)
>consensus
__CUCCGGCUAUCUACACAUCCUUUAACUGCCAAACGGGUAGUGAGCAAAGGUUGUGGCAAAGUUUUGCCAAAAGACGCCUCUCGCUCGACCCUUUGCUUUUCUCAAAGGUCAAGCUUAA
......(((......((((.(((((.((((((.....))))))....))))).)))).....(((((.....))))))))....(((.((((.((((.......)))))))).))).... (-31.06 = -31.38 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:21 2006