| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,944,831 – 15,944,990 |
| Length | 159 |
| Max. P | 0.762271 |
| Location | 15,944,831 – 15,944,950 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.97 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -26.27 |
| Energy contribution | -26.83 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15944831 119 - 22224390 CUGAUAAGAUUUUGGGCAGCAUU-GAAAAGGGUUUUCCUUUUCCAUCUUCGUCCCCUUCGAUUUGAUGGGUUUUUGGGCCACAUUUUCUCGCUUCAUCACUUAUGCAUGCUUUGGUCUAU ......(((((..(((((((((.-(((((.(((((......((((((.(((.......)))...)))))).....)))))...)))))..............)))).))))).))))).. ( -28.36) >DroSec_CAF1 13334 120 - 1 CUGAUAAGAUUUUGGGCAGCAUUGAAAAAGGGUUUUCCUUUUCCAUCUUCGUCCCCUUCGAUUUGAUGGGUUUUUGGGCCACUUUUUCUCGCUUCAUCACUUAUGCAUGCUUUGGUCUAU ......(((((..(((((((((.((((((((((((......((((((.(((.......)))...)))))).....))))).)))))))..............)))).))))).))))).. ( -32.06) >DroSim_CAF1 7884 120 - 1 CUGAUAAGAUUUUGGGCAGCUAUUGAAAAGGGUUUUCCUUUUCCAUCUUCGUCCCCUUCGAUUUGAUGGGUUUUCGGGCCACUUUUUCUCGCUUCAUCACUUAUGCAUGCUUUGGUCUAU ......(((((..(((((......(((((((((((......((((((.(((.......)))...)))))).....))))).))))))...((............)).))))).))))).. ( -26.20) >DroEre_CAF1 12533 118 - 1 CUGAUAAGAUUUUGGGCAGCAUU-GAAAAGGGUUUCCGUUUUCCAUCUUCGUCCCCUUCGAUUUGAUGGGUUU-UGGGCCACUUUUUCUCGCUUCAUCACUUAUGCAUGCUUUGGUCUAU ......(((((..(((((((((.-(((((((...((((...((((((.(((.......)))...))))))...-))))...)))))))..............)))).))))).))))).. ( -31.16) >consensus CUGAUAAGAUUUUGGGCAGCAUU_GAAAAGGGUUUUCCUUUUCCAUCUUCGUCCCCUUCGAUUUGAUGGGUUUUUGGGCCACUUUUUCUCGCUUCAUCACUUAUGCAUGCUUUGGUCUAU ......(((((..(((((((((..(((((((((((......((((((.(((.......)))...)))))).....))))).))))))...............)))).))))).))))).. (-26.27 = -26.83 + 0.56)
| Location | 15,944,871 – 15,944,990 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.55 |
| Mean single sequence MFE | -28.81 |
| Consensus MFE | -25.13 |
| Energy contribution | -25.44 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.87 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15944871 119 + 22224390 GGCCCAAAAACCCAUCAAAUCGAAGGGGACGAAGAUGGAAAAGGAAAACCCUUUUC-AAUGCUGCCCAAAAUCUUAUCAGCGGCCAAAAGUUUUGCACGUCACGUUUCCCACUUUGCCAA (((.......(((.((.....)).)))((((..(((((((((((.....)))))))-...(((((..............))))).............)))).)))).........))).. ( -29.54) >DroSec_CAF1 13374 120 + 1 GGCCCAAAAACCCAUCAAAUCGAAGGGGACGAAGAUGGAAAAGGAAAACCCUUUUUCAAUGCUGCCCAAAAUCUUAUCAGCGGCCAAAAGUUUUGCACGUCACGUUUCCCACUUUGCCAA (((.......(((.((.....)).)))((((....(((((((((.....)))))))))..(((((..............))))).............))))..............))).. ( -30.64) >DroSim_CAF1 7924 120 + 1 GGCCCGAAAACCCAUCAAAUCGAAGGGGACGAAGAUGGAAAAGGAAAACCCUUUUCAAUAGCUGCCCAAAAUCUUAUCAGCGGCCAAAAGUUUUGCACGUCACGUUUCCCACUUUGCCAA (((.(((............)))..((..(((..(((((((((((.....)))))))....(((((..............))))).............)))).)))..))......))).. ( -30.44) >DroEre_CAF1 12573 118 + 1 GGCCCA-AAACCCAUCAAAUCGAAGGGGACGAAGAUGGAAAACGGAAACCCUUUUC-AAUGCUGCCCAAAAUCUUAUCAGCGACCAAAAGUUUUGCACGUCACGUUUCCCACUUUGCCCA (((...-...(((.((.....)).)))...((((.(((.(((((((((....))))-...((((.............))))((((((.....)))...))).))))).)))))))))).. ( -24.62) >consensus GGCCCAAAAACCCAUCAAAUCGAAGGGGACGAAGAUGGAAAAGGAAAACCCUUUUC_AAUGCUGCCCAAAAUCUUAUCAGCGGCCAAAAGUUUUGCACGUCACGUUUCCCACUUUGCCAA (((.......(((.((.....)).)))((((..(((((((((((.....)))))))....(((((..............))))).............)))).)))).........))).. (-25.13 = -25.44 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:20 2006