Locus 6276

Sequence ID X_DroMel_CAF1
Location 15,941,058 – 15,941,176
Length 118
Max. P 0.862412
window10225

overview

Window 5

Location 15,941,058 – 15,941,176
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.06
Mean single sequence MFE -42.00
Consensus MFE -32.58
Energy contribution -32.70
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -2.47
Structure conservation index 0.78
SVM decision value 0.83
SVM RNA-class probability 0.862412
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15941058 118 - 22224390
GGGUUUUGGUUUCGGUUUUGGCUUUGGCCAUGGCUCUCAGUUUUGAGAUUCGGGACCAGCAAGAUUGCGUUUUGGCUC-AGACUUUAGCUGGGAACUG-AAACUCCUAACUGGGAGAAUA
.((((..((((........))))..))))....(((((((((..(((.(((((..((((((((.(((.((....)).)-)).)))..)))))...)))-)).)))..))))))))).... ( -42.50)
>DroSec_CAF1 9684 120 - 1
AAGUUUUGGUUUCGGUUUUGGCUUUGGCCAUGGCUUACAGUUUUGGGAUUCGGGACCAGCAAGAUUGCGUUUUGUCUGAAGACUUUAGCUGGGAACUGGGAACUCCUAACUGGGAGAAUA
...(((..((((((((..((((....))))..)))..(((((..((..((((((....(((....)))......))))))..))..))))))))))..))).(((((....))))).... ( -41.70)
>DroSim_CAF1 3753 120 - 1
AAGUUUUGGUUUCGGUUUUGGCUUUGGCCAUGGCUCACAGUUUUGGGAUUCGGGACCAGCAAGAUUGCGUUUUGGCUGAAGACUUUAGCUGGGAACUGGGAACUCCUAACUGGGAGAAUA
...(((..(((((((((..(((((..((((..((...((((((((((........))..)))))))).))..))))..))).))..)))).)))))..))).(((((....))))).... ( -40.90)
>DroEre_CAF1 8920 117 - 1
UGGUUUGGGUUUCGGUUUUGGCUUCGGCCAUGGCUCGCAGUUUUGGGAUUCGGGACCUGCGAGAUUGCGUUUUGGCUC-AGACU-UAGCUGGGAACUG-AAACUCCUAACUGCGAGAAUA
..........(((.((..((((....))))..))((((((((..(((.(((((..((((((((.(((.((....)).)-)).))-).)).)))..)))-)).)))..))))))))))).. ( -42.90)
>consensus
AAGUUUUGGUUUCGGUUUUGGCUUUGGCCAUGGCUCACAGUUUUGGGAUUCGGGACCAGCAAGAUUGCGUUUUGGCUC_AGACUUUAGCUGGGAACUG_AAACUCCUAACUGGGAGAAUA
.((((..(((((((((((((((....)))..((((...(((((((((...((((((..(((....))))))))).)))))))))..)))).))))))).)))))...))))......... (-32.58 = -32.70 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:19 2006