Locus 6275

Sequence ID X_DroMel_CAF1
Location 15,940,830 – 15,940,938
Length 108
Max. P 0.656157
window10224

overview

Window 4

Location 15,940,830 – 15,940,938
Length 108
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.40
Mean single sequence MFE -27.03
Consensus MFE -24.24
Energy contribution -24.05
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.46
Structure conservation index 0.90
SVM decision value 0.26
SVM RNA-class probability 0.656157
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15940830 108 - 22224390
UCCGAUACCAAUAUGUAAGCAUAUCCAUGGAGCAUCCAUGGUGAGGCCAACCCCAAGACCAAUUAUGUGGGUAAAGCCAAAGUCAAAGUCGCUGCUAAUACCAAAG------------CU
..((((....(((((....)))))((((((.....))))))...(((..((((((.((....)).)).))))...))).........))))..(((........))------------). ( -25.30)
>DroSec_CAF1 9475 108 - 1
UCCGAUACCAAUAUGCAAGCAUAUCCAUGGAGCAGCCAUGGUGAGGCCAACCCCAAGACCAAUUAUGUGGGUAAAGCCAAAGUCAAAGUCGCUGCUAAUACCAAAG------------CU
.......((((((((....)))))...)))((((((.((..((((((..((((((.((....)).)).))))...)))....)))..)).))))))..........------------.. ( -27.30)
>DroSim_CAF1 3544 108 - 1
UCCGAUACCAAUAUGCAAGCAUAUCCAUGGAGCAGCCAUGGUGAGGCCAACCCCAAGACCAAUUAUGUGGGUAAAGCCAAAGUCAAAGUCGCUGCUAAUACCAAAG------------CU
.......((((((((....)))))...)))((((((.((..((((((..((((((.((....)).)).))))...)))....)))..)).))))))..........------------.. ( -27.30)
>DroEre_CAF1 8710 120 - 1
UCCGAUACCAAUAUGCAAGCAUAUCCAUGGAGCAUCCAUGGCCAGGCCAACCCCAAGACCAAUUAUGUGGGUAAAGCCAAAGUCAAAGUCGCUGCUAAUACCAAAGGUAAAGCCAAAGCC
...(((....(((((....)))))((((((.....))))))...(((..((((((.((....)).)).))))...)))...)))......((((((..((((...)))).)))...))). ( -28.20)
>consensus
UCCGAUACCAAUAUGCAAGCAUAUCCAUGGAGCAGCCAUGGUGAGGCCAACCCCAAGACCAAUUAUGUGGGUAAAGCCAAAGUCAAAGUCGCUGCUAAUACCAAAG____________CU
..............(((.((....((((((.....))))))...(((..((((((.((....)).)).))))...)))............)))))......................... (-24.24 = -24.05 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:18 2006