Locus 6272

Sequence ID X_DroMel_CAF1
Location 15,937,652 – 15,937,772
Length 120
Max. P 0.809484
window10218

overview

Window 8

Location 15,937,652 – 15,937,772
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -36.20
Consensus MFE -31.83
Energy contribution -31.50
Covariance contribution -0.33
Combinations/Pair 1.09
Mean z-score -2.30
Structure conservation index 0.88
SVM decision value 0.64
SVM RNA-class probability 0.809484
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15937652 120 - 22224390
AUCCAAAAUCUAUUUGGAACGAGACUCCAUGCGGAAUUAGGGAUGCAAUUCCCAAUUCCGUGGUGGUAAGGGUAAAUUUAUGCCAUAAAUCGAUCCAUGCUAUGGACCGUAAAGGUACAC
.((((((.....))))))........((..((((((((.((((......)))))))))))).((((((.((((..((((((...))))))..)))).))))))))(((.....))).... ( -37.60)
>DroSec_CAF1 5932 120 - 1
AUCCAAAAUCUAUUUGGAACGAGUCUCGAUGCGGAAUUAGGGAUGCAAUUCCCAAUUCCGUGGUGGUAAGGGUAAAUUUAUGCCAUAAAUCGAUCCAUGCUAUGGGCCGUAAAGGUACAC
.((((((.....))))))(((.((((....((((((((.((((......)))))))))))).((((((.((((..((((((...))))))..)))).))))))))))))).......... ( -39.20)
>DroEre_CAF1 5670 120 - 1
AUCGAAAAUCUCUUUGGAACGAGACUCCAUGCGGAAUUAGGGAUGCAAUUCCCAAUUCCGUGGUGGUAAGGGUAACUGUAUGCCAUAAAUCGAUUCAUGCUAUGGGCUGUAAAGGUACAC
(((((...((((........))))......((((((((.((((......)))))))))))).((((((.((....))...))))))...)))))........((..((.....))..)). ( -31.80)
>consensus
AUCCAAAAUCUAUUUGGAACGAGACUCCAUGCGGAAUUAGGGAUGCAAUUCCCAAUUCCGUGGUGGUAAGGGUAAAUUUAUGCCAUAAAUCGAUCCAUGCUAUGGGCCGUAAAGGUACAC
.........((((.((((.(((........((((((((.((((......)))))))))))).((((((............))))))...))).))))....))))(((.....))).... (-31.83 = -31.50 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:12 2006