Locus 6271

Sequence ID X_DroMel_CAF1
Location 15,936,555 – 15,936,675
Length 120
Max. P 0.570395
window10217

overview

Window 7

Location 15,936,555 – 15,936,675
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.52
Mean single sequence MFE -33.47
Consensus MFE -25.49
Energy contribution -25.60
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.08
Structure conservation index 0.76
SVM decision value 0.07
SVM RNA-class probability 0.570395
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15936555 120 + 22224390
CAUUUUUUUUUUUCGCUGAGCAAGGGCCUCGUCAUCGUCUUGCCAAACUCGCAUGUUGGCAAGAUACACACAUAUAUGGAUGUACGAAUGUACAUACAUACGUACGAAAGGUUGUAGCUG
..................(((.(.(((((..((...((((((((((.(......)))))))))))................(((((.((((....)))).))))))).))))).).))). ( -33.60)
>DroSec_CAF1 4859 113 + 1
UA---UUUUUUUUCGCUGAGCAAGGGCCUCGUCAUCGUCUUGCCAAACUCGCAUGUUGGCAAGAUACACACAUAUAUGGAUGUACGAAUGUACA----UACGUACGAAAGGUUGUAGCUG
..---.............(((.(.((((((((((((((((((((((.(......))))))))))).....((....)))))).)))).(((((.----...)))))...)))).).))). ( -33.50)
>DroEre_CAF1 4606 111 + 1
UA---U-UUUUUUCGCUGAGCAAGGGCCUCGCCAUCGUCUUGCCAAACUCGCAUGUUGGCAAGAUACACACAUGUAUGUAU-U----AUAUACAUGCAUACGUACAAAAGGUUGUGGCUG
..---.-.................((((.((((...((((((((((.(......)))))))))))......((((((((((-.----..))))))))))..........)).)).)))). ( -33.30)
>consensus
UA___UUUUUUUUCGCUGAGCAAGGGCCUCGUCAUCGUCUUGCCAAACUCGCAUGUUGGCAAGAUACACACAUAUAUGGAUGUACGAAUGUACAU_CAUACGUACGAAAGGUUGUAGCUG
..................(((.(.(((((.......((((((((((.(......))))))))))).......................(((((........)))))..))))).).))). (-25.49 = -25.60 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:11 2006