| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,935,733 – 15,935,834 |
| Length | 101 |
| Max. P | 0.940519 |
| Location | 15,935,733 – 15,935,834 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.34 |
| Mean single sequence MFE | -31.53 |
| Consensus MFE | -16.61 |
| Energy contribution | -16.83 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15935733 101 + 22224390 AAAGUCAUCGGGUUCAGGUAUCUGGUUGGUUAUCUG--GCUAG-AGC----------------AGCUGGUAAAUGCAGUUGCAGUAAUUAUUGCACAGAAGAUUACGUGACACAUCUGAU ......((((((((((.(((((((((..(....)..--)))))-)((----------------(((((.......))))))).....................))).)))...))))))) ( -30.50) >DroSim_CAF1 19419 101 + 1 GAAGUCGUCGGGUUCAGGUAUCUGGUUGGCUAUCUGCUGCCAGCGGC----------------AGCUGGUAAAUUCAGUUGCAGUAAUUAUUGCACAGAAGAUUACGUGAC--AUUUGA- .......(((((((((.(((((((((((((........)))))).((----------------((((((.....)))))))).............))))....))).))).--))))))- ( -32.70) >DroYak_CAF1 18195 109 + 1 GGAGU---CGGGUUCAGAUAUCUGAA--CUUAUCUG---UUAG-AGAAACUGGUAAACUGGUAAACUGGUAAAUUCAGUUGCAGUAAUUAUUGCACAGAAAAUUACGUGAC--AUCUGAU (((((---(((((((((....)))))--))).((((---(...-...((((((...((..(....)..))....))))))(((((....)))))))))).........)))--.)))... ( -31.40) >consensus GAAGUC_UCGGGUUCAGGUAUCUGGUUGGUUAUCUG__GCUAG_AGC________________AGCUGGUAAAUUCAGUUGCAGUAAUUAUUGCACAGAAGAUUACGUGAC__AUCUGAU ........((((((((.(((((((.......................................((((((.....))))))(((((....))))).))))....))).)))...))))).. (-16.61 = -16.83 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:10 2006