Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,733,093 – 1,733,249 |
Length | 156 |
Max. P | 0.999935 |
Location | 1,733,093 – 1,733,209 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.86 |
Mean single sequence MFE | -57.72 |
Consensus MFE | -52.58 |
Energy contribution | -52.26 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -3.56 |
Structure conservation index | 0.91 |
SVM decision value | 4.66 |
SVM RNA-class probability | 0.999935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1733093 116 + 22224390 UGAGGCAAUCC----GUACAGAGAGCAGGACUUACCAUGGUGAGAUACGGGUGUCGGAGGAGUAACAUUACCUGCUCCUGGCGCUCGUACUCGUGGGUCAGGGUGUCCAUUGCUCGCUGA ...((....))----...(((.(((((((((..(((.(((((((.((((((((((..(((((((........)))))))))))))))))))))....))).)))))))..))))).))). ( -47.40) >DroSec_CAF1 4312 118 + 1 UGGGGCAAUCC--GCGUACAGCGAGCAGGACUUACCAGGGUGAGAUACGGGUGUCGAAGGAGUAGCAUUACCUGCUCCUGGCGCUCGUACUCGCGGGUGAGGGUGUCCAUUGCUCGCUGG .(((....)))--.....((((((((((((((((((...(((((.((((((((((..((((((((......))))))))))))))))))))))).)))))....))))..))))))))). ( -62.00) >DroSim_CAF1 4866 118 + 1 UGGGGCAAUCC--GCGUACAGCGAGCAGGACUUACCAGGGUGAGAUACGGGUGUCGAAGGAGUAGCAUUACCUGCUCCUGGCGCUCGUACUCGCGGGUGAGGGUGUCCAUUGCUCGCUGG .(((....)))--.....((((((((((((((((((...(((((.((((((((((..((((((((......))))))))))))))))))))))).)))))....))))..))))))))). ( -62.00) >DroEre_CAF1 4407 120 + 1 UCGGACAAUCCGCGGGUAUAGCGAGCAAGACUUACCAGGGUGAUAUACGGGUGCCGGAGGAGCAGCAUCACCUGCUCCUGGCGCUCGUACUCGCGGGUCAGGGUGUCCAUUGCUCGCUGG .(((.....)))......((((((((((....((((..(((((..((((((((((..((((((((......)))))))))))))))))).))))....)..))))....)))))))))). ( -56.70) >DroYak_CAF1 4495 119 + 1 CCGUGUGGUU-ACGCGUAUAGCGAGCAAGACUUACCAGGGUAAGGUACGGGUGCCGAAGGAGCAGCAUGAUCUGCUCCUGGCGCUCGUACUCGCGGGUCAGGGUGUCCAUUGCUCGCUGG .(((((....-)))))..(((((((((((((((((....)))))(((((((((((..((((((((......)))))))))))))))))))))...((.(.....).)).)))))))))). ( -60.50) >consensus UGGGGCAAUCC__GCGUACAGCGAGCAGGACUUACCAGGGUGAGAUACGGGUGUCGAAGGAGUAGCAUUACCUGCUCCUGGCGCUCGUACUCGCGGGUCAGGGUGUCCAUUGCUCGCUGG ..................((((((((((..((.(((...(((((.((((((((((..((((((((......))))))))))))))))))))))).))).))((...)).)))))))))). (-52.58 = -52.26 + -0.32)
Location | 1,733,093 – 1,733,209 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.86 |
Mean single sequence MFE | -41.50 |
Consensus MFE | -32.12 |
Energy contribution | -32.72 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.07 |
Mean z-score | -1.58 |
Structure conservation index | 0.77 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625546 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1733093 116 - 22224390 UCAGCGAGCAAUGGACACCCUGACCCACGAGUACGAGCGCCAGGAGCAGGUAAUGUUACUCCUCCGACACCCGUAUCUCACCAUGGUAAGUCCUGCUCUCUGUAC----GGAUUGCCUCA .(((.(((((..((((............(((((((.(.(...((((..((((....)))).))))..).).)))).)))((....))..))))))))).)))...----((....))... ( -32.10) >DroSec_CAF1 4312 118 - 1 CCAGCGAGCAAUGGACACCCUCACCCGCGAGUACGAGCGCCAGGAGCAGGUAAUGCUACUCCUUCGACACCCGUAUCUCACCCUGGUAAGUCCUGCUCGCUGUACGC--GGAUUGCCCCA .(((((((((..((((...(((...(....)...))).((((((((((.....)))).......((.....))........))))))..))))))))))))).....--((......)). ( -39.80) >DroSim_CAF1 4866 118 - 1 CCAGCGAGCAAUGGACACCCUCACCCGCGAGUACGAGCGCCAGGAGCAGGUAAUGCUACUCCUUCGACACCCGUAUCUCACCCUGGUAAGUCCUGCUCGCUGUACGC--GGAUUGCCCCA .(((((((((..((((...(((...(....)...))).((((((((((.....)))).......((.....))........))))))..))))))))))))).....--((......)). ( -39.80) >DroEre_CAF1 4407 120 - 1 CCAGCGAGCAAUGGACACCCUGACCCGCGAGUACGAGCGCCAGGAGCAGGUGAUGCUGCUCCUCCGGCACCCGUAUAUCACCCUGGUAAGUCUUGCUCGCUAUACCCGCGGAUUGUCCGA ..((((((((..((((......(((.(.(((((((.(.(((((((((((......))))))))..))).).))))).)).)...)))..)))))))))))).......(((.....))). ( -47.60) >DroYak_CAF1 4495 119 - 1 CCAGCGAGCAAUGGACACCCUGACCCGCGAGUACGAGCGCCAGGAGCAGAUCAUGCUGCUCCUUCGGCACCCGUACCUUACCCUGGUAAGUCUUGCUCGCUAUACGCGU-AACCACACGG ..((((((((..((((..............(((((.(.(((((((((((......))))))))..))).).))))).((((....))))))))))))))))...((.((-....)).)). ( -48.20) >consensus CCAGCGAGCAAUGGACACCCUGACCCGCGAGUACGAGCGCCAGGAGCAGGUAAUGCUACUCCUUCGACACCCGUAUCUCACCCUGGUAAGUCCUGCUCGCUGUACGC__GGAUUGCCCCA .(((((((((..((((..........((........))((((((((((.....)))).......((.....))........))))))..))))))))))))).................. (-32.12 = -32.72 + 0.60)
Location | 1,733,129 – 1,733,249 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -54.59 |
Consensus MFE | -52.18 |
Energy contribution | -51.54 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.13 |
Mean z-score | -2.16 |
Structure conservation index | 0.96 |
SVM decision value | 3.93 |
SVM RNA-class probability | 0.999709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1733129 120 + 22224390 UGAGAUACGGGUGUCGGAGGAGUAACAUUACCUGCUCCUGGCGCUCGUACUCGUGGGUCAGGGUGUCCAUUGCUCGCUGACUGACCGGUUUCACCAGGCGCCGCUUGCCCCGGAAUAUGU .(((.((((((((((..(((((((........))))))))))))))))))))(.((((.((((((((...((...((((......))))..))...)))))).)).)))))......... ( -47.20) >DroSec_CAF1 4350 120 + 1 UGAGAUACGGGUGUCGAAGGAGUAGCAUUACCUGCUCCUGGCGCUCGUACUCGCGGGUGAGGGUGUCCAUUGCUCGCUGGCUGACCGGCUUCACCAGGCGCCGCUUGCCCCGGAAUAUGU .(((.((((((((((..((((((((......)))))))))))))))))))))(.(((..((((((((...((...(((((....)))))..))...)))))).))..))))......... ( -57.10) >DroSim_CAF1 4904 120 + 1 UGAGAUACGGGUGUCGAAGGAGUAGCAUUACCUGCUCCUGGCGCUCGUACUCGCGGGUGAGGGUGUCCAUUGCUCGCUGGCUGACCGGUUUCACCAGGCGCCGCUUGCCCCGGAAUAUGU .(((.((((((((((..((((((((......)))))))))))))))))))))(.(((..((((((((...((...(((((....)))))..))...)))))).))..))))......... ( -55.50) >DroEre_CAF1 4447 120 + 1 UGAUAUACGGGUGCCGGAGGAGCAGCAUCACCUGCUCCUGGCGCUCGUACUCGCGGGUCAGGGUGUCCAUUGCUCGCUGGCUCACCGGCUUUACCAGGCGCCGCUUGCCUCGGAAUAUGU .....((((((((((..((((((((......)))))))))))))))))).((.(((((.((((((((........(((((....))))).......)))))).)).))).))))...... ( -53.26) >DroYak_CAF1 4534 120 + 1 UAAGGUACGGGUGCCGAAGGAGCAGCAUGAUCUGCUCCUGGCGCUCGUACUCGCGGGUCAGGGUGUCCAUUGCUCGCUGGCUGACCGGCUUCACCAGGCGCCGCUUGCCCCGGAAUAUGU ...((((((((((((..((((((((......))))))))))))))))))))((.((((.((((((((...((...(((((....)))))..))...)))))).)).))))))........ ( -59.90) >consensus UGAGAUACGGGUGUCGAAGGAGUAGCAUUACCUGCUCCUGGCGCUCGUACUCGCGGGUCAGGGUGUCCAUUGCUCGCUGGCUGACCGGCUUCACCAGGCGCCGCUUGCCCCGGAAUAUGU .....((((((((((..((((((((......)))))))))))))))))).(((.(((..((((((((...((...(((((....)))))..))...)))))).))..))))))....... (-52.18 = -51.54 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:46 2006