| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,935,512 – 15,935,616 |
| Length | 104 |
| Max. P | 0.817583 |
| Location | 15,935,512 – 15,935,616 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.31 |
| Mean single sequence MFE | -21.38 |
| Consensus MFE | -14.25 |
| Energy contribution | -13.48 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15935512 104 - 22224390 CUAGGUUGCGAACAGAAAAAAAAAAUAAAAAACUAUUGAUUUUUCCAAUGGGAAAUGUUUUGUAGUCAAAUUGGAAUAAGCGAUUUGAAUUACCA----------------AAUUUUGCC .......(((((.........((((((.....((((((.......))))))....))))))((((((((((((.......))))))).)))))..----------------...))))). ( -17.40) >DroSim_CAF1 19192 111 - 1 CUAGGUUGCGAACAGCAAAA---------AAACUAUUGAUUUUUCCAAUGGGAAAUGAUUUGUAAUCAAAUUGGAAUAAGCGAUUUGAAUUACCAAAAAUCAAGAGGCACAAAUUUUGCC .....((((.....))))..---------...((((((.......))))))....((((((((((((((((((.......))))))).)))))...))))))...((((.......)))) ( -23.00) >DroYak_CAF1 17968 116 - 1 CUAGGUUGCAAACAGCAAAAAAAAA--AAAAAAUAUUGAUUUUU-CAAUGGGAAAUGAUUUGCAGCCAAAUUGGAAUCAGCGAUUCGAAUUACAA-AAAUCGAGAACUACUAAUGUGGCC ...(((((((((((...........--......((((((....)-))))).....)).))))))))).((((.(((((...))))).))))....-..........((((....)))).. ( -23.75) >consensus CUAGGUUGCGAACAGCAAAAAAAAA__AAAAACUAUUGAUUUUUCCAAUGGGAAAUGAUUUGUAGUCAAAUUGGAAUAAGCGAUUUGAAUUACCA_AAAUC_AGA___AC_AAUUUUGCC ...(((((((((((..................((((((.......))))))....)).))))))))).((((.((((.....)))).))))............................. (-14.25 = -13.48 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:09 2006