Locus 6268

Sequence ID X_DroMel_CAF1
Location 15,935,122 – 15,935,241
Length 119
Max. P 0.754517
window10214

overview

Window 4

Location 15,935,122 – 15,935,241
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.04
Mean single sequence MFE -30.94
Consensus MFE -26.20
Energy contribution -26.20
Covariance contribution 0.01
Combinations/Pair 1.11
Mean z-score -2.11
Structure conservation index 0.85
SVM decision value 0.48
SVM RNA-class probability 0.754517
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15935122 119 + 22224390
AAAAAAGGUCAAAUAGCCACCAAUGGCACUUGACUAGGCUUUCUGUAUCCGGCACUCUUAA-AAUACAAACACAUGAGUGCCACGCAAAGCUCUUGCAAUCCAGUUGUGCCACAGAUUUG
......((((((...((((....))))..)))))).(((...(((.....(((((((....-.............)))))))..((((.....))))....)))....)))......... ( -34.03)
>DroSim_CAF1 18840 116 + 1
---AAAGGUCAAAUAGCCCCCAAUGGCACUUGACUAGGCUCUUCGCAUCCGGCACUCUUGA-AAUACAAACACACGAGUGCCACGCAAAGCUCUUCCAGUUCGGUUGUGCCACAGAUUUG
---...((((((...(((......)))..)))))).(((.....(((.(((((((((.((.-..........)).)))))))......((((.....)))).)).))))))......... ( -30.30)
>DroYak_CAF1 17646 117 + 1
---AAAGGUCAAAUAGCCCCCAAUGGUACUUGACUAGCCUUUUUGUAUCCGGCACUCUUAAAAACACAAACACAUGAGUGCCACGCAAAGCUCUUUCAGUCUAGUUGUGCCACAGAUUUG
---...(((......))).....((((((..((((((.((((((((....(((((((..................)))))))..)))))).......)).))))))))))))........ ( -28.48)
>consensus
___AAAGGUCAAAUAGCCCCCAAUGGCACUUGACUAGGCUUUUUGUAUCCGGCACUCUUAA_AAUACAAACACAUGAGUGCCACGCAAAGCUCUUCCAGUCCAGUUGUGCCACAGAUUUG
......((((((...(((......)))..))))))......(((((....(((((((..................)))))))..(((.((((..........)))).))).))))).... (-26.20 = -26.20 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:09 2006