Locus 6267

Sequence ID X_DroMel_CAF1
Location 15,932,469 – 15,932,570
Length 101
Max. P 0.917486
window10213

overview

Window 3

Location 15,932,469 – 15,932,570
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 90.76
Mean single sequence MFE -25.17
Consensus MFE -23.25
Energy contribution -23.70
Covariance contribution 0.45
Combinations/Pair 1.13
Mean z-score -2.18
Structure conservation index 0.92
SVM decision value 1.11
SVM RNA-class probability 0.917486
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15932469 101 - 22224390
GUGAAAGCAAUUUGCCGAACAGAAACGGUGAUACAAGUUUACAAAGGAGAAAUGGUGACAUCAAUUUGCAAAUGCGAAAUGGUGACACCAGUUUGCAGAUA
((....)).((((((.((((.......((((.......))))..........(((((.(((((.(((((....))))).))))).))))))))))))))). ( -29.20)
>DroSim_CAF1 16237 101 - 1
GUGAAAGCAAUUUGCAGAACAGAAACGGUGACACAAGUUUACAAAGGAGAAAUGGUGACACCAAUUUGCAAUUGCGAAAUGGUGAUAACAGUUUGCAGAUA
((....)).(((((((((.............(((...(((........)))...))).(((((.(((((....))))).))))).......))))))))). ( -25.60)
>DroYak_CAF1 15281 101 - 1
GUGACAGCAGCUUGCAGAACAGAAACGGUGACACAAGUUUACAAAGGAGAAAUGGUGACACGAAUGUGCCAAUGCGAAAUGGUGCCGCCAGUUUGCAGAUA
...........(((((((........(....)....................(((((.(((.(...(((....)))...).))).))))).)))))))... ( -20.70)
>consensus
GUGAAAGCAAUUUGCAGAACAGAAACGGUGACACAAGUUUACAAAGGAGAAAUGGUGACACCAAUUUGCAAAUGCGAAAUGGUGACACCAGUUUGCAGAUA
((....)).((((((.((((.......((((.......))))..........(((((.(((((.(((((....))))).))))).))))))))))))))). (-23.25 = -23.70 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:08 2006