Locus 6264

Sequence ID X_DroMel_CAF1
Location 15,928,113 – 15,928,209
Length 96
Max. P 0.996111
window10209

overview

Window 9

Location 15,928,113 – 15,928,209
Length 96
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 81.08
Mean single sequence MFE -33.93
Consensus MFE -24.02
Energy contribution -25.58
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -3.04
Structure conservation index 0.71
SVM decision value 2.65
SVM RNA-class probability 0.996111
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15928113 96 - 22224390
GCAAGGAA---CGCUAUCCUAAUAA------CGAUAGCGGUAGUGGCGAGUGGCAUGAACGAAUGAUGCUACAGCGAGAAAACGCUCGCCACAAACAU---CAGAAGC
((......---(((((((.......------.)))))))...((((((((((((((.(.....).))))))).(((......))))))))))......---.....)) ( -35.80)
>DroSec_CAF1 26648 96 - 1
GCAAGGAA---CGCUAUCCCAAUCA------CGAUAGCGGUAGUGGCGAGUGGCAUGAACGAAUGAUGCUACAGCGAGAAAACACUCGCCACAAACAU---CAGAAGC
((......---(((((((.......------.)))))))...((((((((((.(((......))).(((....)))......))))))))))......---.....)) ( -33.80)
>DroSim_CAF1 11838 96 - 1
GCAAGGAA---CGCUAUCCCAAUCA------CGAUAGCGGUAGUGGCGAGUGGCAUGAACGAAUGAUGCUACAGCGAGAAAACACUCGCCACAAACAU---CAGAAGC
((......---(((((((.......------.)))))))...((((((((((.(((......))).(((....)))......))))))))))......---.....)) ( -33.80)
>DroEre_CAF1 20075 102 - 1
GCAAGGAA---CGCAAUCCUAAUGACGAUAACGAUAGCGGCAGUGGCGAGUGGCAUGAACGAAUGAUGCUACAGCGUGAAAACGCUCGCCACAAACAC---CAGAAGC
....((..---(((.(((..............))).)))...((((((((((((((.(.....).))))))).((((....))))))))))).....)---)...... ( -35.34)
>DroMoj_CAF1 22223 105 - 1
GCAGGAAGCAGCGCCAUGAUGAUGACGAU---GACAGCGCCAGCGGCGAGUGGCACGAGCGCAUGAUGCAACAUCGUGAGCACGCACGCCAGCGUCACGAGAAGAAGC
((.....((.((((..(.((.......))---.)..))))..))((((..((((.((.((.(((((((...))))))).)).))...)))).))))..........)) ( -30.90)
>consensus
GCAAGGAA___CGCUAUCCUAAUCA______CGAUAGCGGUAGUGGCGAGUGGCAUGAACGAAUGAUGCUACAGCGAGAAAACGCUCGCCACAAACAU___CAGAAGC
((.........(((((((..............)))))))...((((((((((.(((......))).(((....)))......))))))))))..............)) (-24.02 = -25.58 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:04 2006