Locus 6258

Sequence ID X_DroMel_CAF1
Location 15,923,614 – 15,923,716
Length 102
Max. P 0.868317
window10198

overview

Window 8

Location 15,923,614 – 15,923,716
Length 102
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 88.01
Mean single sequence MFE -25.32
Consensus MFE -18.80
Energy contribution -20.28
Covariance contribution 1.48
Combinations/Pair 1.11
Mean z-score -2.16
Structure conservation index 0.74
SVM decision value 0.86
SVM RNA-class probability 0.868317
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15923614 102 + 22224390
-CUUGCCAAAAUUUGAAGCAUAACGCAACAUAAUCAUAUGAGGACACAUAAACACAGUCAGCUGUUCGU----------------AAGAUGUUGGGACAUUUUACCUCACAACAGCAAA
-.((((...........((.....))............(((((..........((((....))))...(----------------(((((((....))))))))))))).....)))). ( -19.10)
>DroSec_CAF1 22345 118 + 1
-CUUGCCAAAAUUUGAAGCAUAACGCAUCAUAAUCAUAUGAGGACACAUAAACACAGUCAGCUGUUCGUACUCAGACGCAACAGCAAGAUGUUGGGACAUUUUACCUCACAACAGCAAA
-.((((.......(((.((.....)).)))........(((((.................(((((((((......))).))))))(((((((....))))))).))))).....)))). ( -28.00)
>DroSim_CAF1 7070 118 + 1
-CUUGCCAAAAUUUGAAGCAUAACGCACCAUAAUCAUAUGAGGACACAUAAACACAGUCAGCUGUUCGUACUCAGACGCAACAGCAAGAUGUUGGGACAUUUUACCUCACAACAGCAAA
-.((((...........((.....))............(((((.................(((((((((......))).))))))(((((((....))))))).))))).....)))). ( -26.20)
>DroEre_CAF1 15796 119 + 1
AUUUGCCAAAAUCUUAAGCAUAACGCACCAUAAUCAUAUGAGGCCACAAAAACACAGUCAGCUGUUCGUAUUUAGACGCAACAGCAAGAUGUUGGCACAUUUUACAUCACAAUAGCAGC
...((((((.(((((.........((..((((....))))..))................(((((((((......))).))))))))))).))))))...................... ( -28.40)
>DroYak_CAF1 6960 118 + 1
-CUUGCCAAAAUCUGAAGCAUAACGCAACAUAAUCAUAUGAGGCCACAAAAACACAGUCAGCUGUUCGUAUUUAAGCGCAACAGCAAGAUGUUGGGACAUUUUACCUCACAACAGCGGA
-..........((((..((.....))............(((((.................(((((((((......))).))))))(((((((....))))))).)))))......)))) ( -24.90)
>consensus
_CUUGCCAAAAUUUGAAGCAUAACGCAACAUAAUCAUAUGAGGACACAUAAACACAGUCAGCUGUUCGUACUCAGACGCAACAGCAAGAUGUUGGGACAUUUUACCUCACAACAGCAAA
..((((...........((.....))............(((((.................(((((((((......))).))))))(((((((....))))))).))))).....)))). (-18.80 = -20.28 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:42 2006