Locus 6257

Sequence ID X_DroMel_CAF1
Location 15,923,301 – 15,923,391
Length 90
Max. P 0.992932
window10197

overview

Window 7

Location 15,923,301 – 15,923,391
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 96.47
Mean single sequence MFE -26.36
Consensus MFE -24.58
Energy contribution -24.58
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.93
SVM decision value 2.36
SVM RNA-class probability 0.992932
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15923301 90 - 22224390
UCUCUCUCGCCGUUGAAAUUAUACCCCUGCGCCAGUCGGGGAAAAAUUAGAGCAACGCUU-GCUCCACAACGCUCGAUAAAACUGCGGGAA
....(((((((((((........((((.((....)).))))........(((((.....)-))))..)))))............)))))). ( -26.90)
>DroSec_CAF1 22014 91 - 1
UCCCUCUCGCCGUUGAAAAUAUACCCCUGCGCCAGUCGGGGAAAAAUUAGAGCAACGCUUGGCUCCACAACGCUCGAUAAAACUGCGGGAA
....(((((((((((........((((.((....)).))))........((((........))))..)))))............)))))). ( -25.90)
>DroSim_CAF1 6745 91 - 1
UCCCUCUCGCCGUUGAAAAUAUACCCCUGCGCCAGUCGGGGAAAAAUUAGAGCAACGCUUGGCUCCACAACGCUCGAUAAAACUGCGGGAA
....(((((((((((........((((.((....)).))))........((((........))))..)))))............)))))). ( -25.90)
>DroEre_CAF1 15474 90 - 1
UCUCUCUCGCUGUUUAAAAUAUACCCCUGCGACAGUCGGGGAAAAAUUAGAGCAACGCUU-GCUCCACAACGCUCGAUAAAACUGCGGGAA
....((((((.((((........((((.((....)).))))........(((((.....)-))))..............)))).)))))). ( -26.90)
>DroYak_CAF1 6638 90 - 1
UCGCUCUCGCUGUUGAAAAUAUACCCCUGCGCCAGUCGGGGAAAAAUUAGAGCAACGCUU-GCUCCACAACGCUCGAUAAAACUGCGGGAA
....((((((((((((.......((((.((....)).))))........(((((.....)-))))........)))))).....)))))). ( -26.20)
>consensus
UCCCUCUCGCCGUUGAAAAUAUACCCCUGCGCCAGUCGGGGAAAAAUUAGAGCAACGCUU_GCUCCACAACGCUCGAUAAAACUGCGGGAA
....((((((.(((.........((((.((....)).))))........((((........))))...............))).)))))). (-24.58 = -24.58 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:41 2006