Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,921,691 – 15,921,792 |
Length | 101 |
Max. P | 0.787645 |
Location | 15,921,691 – 15,921,792 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.59 |
Mean single sequence MFE | -15.64 |
Consensus MFE | -11.82 |
Energy contribution | -12.14 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.05 |
Mean z-score | -1.88 |
Structure conservation index | 0.76 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15921691 101 + 22224390 AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUAAAAUGACAAAAAGGCCCCCUCUUUGUAUUGUUAAGCUUAAAUGCCAUAUAAGCUAAC ....(((((((.(((.((((....)))).)))....)))))))......(((((.(((...))).)))))...((((.(((((.........))))))))) ( -19.80) >DroSec_CAF1 20363 97 + 1 AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUAAAAAUGACAAAAAGGC----UCUUUGAAUUCUUAAGCUUAAAUACCAUAUAAGCAAAC .....((((((.(((.((((....)))).)))....))))))........((((.....----..)))).........(((((.........))))).... ( -13.50) >DroSim_CAF1 5029 97 + 1 AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUAAAAUGACAAAAAGGC----UCUUUGAAUUCUUAAGCUUAAAUACCAUAUAAGCAAAC ....(((((((.(((.((((....)))).)))....))))))).......((((.....----..)))).........(((((.........))))).... ( -14.40) >DroEre_CAF1 13842 87 + 1 AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUUAAAUAACAAA-C-------------AAUUCUUAAGCCAAAAUGCCAUAUAGGAAAAC ...((((((((.(((.((((....)))).)))....))))))))..........-.-------------..((((((.((......))....))))))... ( -14.40) >DroYak_CAF1 4994 88 + 1 AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUAAAAUGACAAAAA-------------AAUUCUUAAGCCGAAAUGCCAUAUAGGCAAAC ....(((((((.(((.((((....)))).)))....))))))).............-------------................((((.....))))... ( -16.10) >consensus AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUAAAAUGACAAAAAGGC____UCUUUGAAUUCUUAAGCUUAAAUGCCAUAUAAGCAAAC ....(((((((.(((.((((....)))).)))....)))))))...................................(((((.........))))).... (-11.82 = -12.14 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:40 2006