Locus 6255

Sequence ID X_DroMel_CAF1
Location 15,920,727 – 15,920,826
Length 99
Max. P 0.651951
window10195

overview

Window 5

Location 15,920,727 – 15,920,826
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 81.55
Mean single sequence MFE -23.60
Consensus MFE -18.55
Energy contribution -18.80
Covariance contribution 0.25
Combinations/Pair 1.17
Mean z-score -1.58
Structure conservation index 0.79
SVM decision value 0.25
SVM RNA-class probability 0.651951
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15920727 99 + 22224390
UUAAACCAAUAAAUAUAGGUUGAUCUAAGUCUUAGUUCUAGGACAGAUCAUGGUAAUUUUGUGCUUUUGGUUGUGUGCGAUAGGCAAGUCGUGCGAUGC
...((((((...........((((((..((((((....)))))))))))).((((......)))).)))))).((..((((......))))..)).... ( -25.30)
>DroSec_CAF1 19260 85 + 1
UUAAACCAAUAAAUAUUGGUUGAUCUAAGUCUUAGUUCUAGGACAGAUCAUGGUAAUUUU--------------GUGCGAUAGGCAAGUCGUGCGAUGC
...(((((((....)))))))(((((..((((((....))))))))))).........((--------------(..((((......))))..)))... ( -25.70)
>DroSim_CAF1 4075 85 + 1
UUAAACCAAUAAAUAUUGGUUGAUCUAAGUCUUAGUUCUAGGGUAGAUCAUGGUAAUUAU--------------GUGCGAUAGGCAAGUCGUGCGAUGC
...(((((((....)))))))((((((..(((((....)))))))))))..........(--------------(..((((......))))..)).... ( -22.40)
>DroEre_CAF1 12963 99 + 1
UUAAACUAAUGACUAUCGGUUGAUCUAAGUCUUAGUUCCAUGGCAGAUCUAGGUAAUUUUGCCCUUUGGGUUGUGUGCAAGAGACAAGUUGUGCGAUGC
...((((((.(((((((....)))...)))))))))).(((.(((.((((..(((.....((((...))))....)))...))).....).))).))). ( -21.00)
>consensus
UUAAACCAAUAAAUAUUGGUUGAUCUAAGUCUUAGUUCUAGGACAGAUCAUGGUAAUUUU______________GUGCGAUAGGCAAGUCGUGCGAUGC
...(((((((....)))))))(((((..((((((....))))))))))).........................(..((((......))))..)..... (-18.55 = -18.80 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:39 2006