Locus 6253

Sequence ID X_DroMel_CAF1
Location 15,920,147 – 15,920,265
Length 118
Max. P 0.959855
window10189

overview

Window 9

Location 15,920,147 – 15,920,265
Length 118
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 78.22
Mean single sequence MFE -27.88
Consensus MFE -19.24
Energy contribution -19.55
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -2.12
Structure conservation index 0.69
SVM decision value 1.51
SVM RNA-class probability 0.959855
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15920147 118 + 22224390
AGUGAAAAACAUUGGCGAAAGCAGAUGAUAAGCCGUGAGGCAAUACACUGGAAAAAACGAGUGCAAUUUGUGUGCUAACUUCUGCUUAGACGGUGCCUCAACAAGGAUUCUAUAUGCA
((((.....((((.((....)).))))....(((....)))....))))((((......((..((.....))..))...))))((.((((.....(((.....)))..))))...)). ( -30.80)
>DroSec_CAF1 18688 110 + 1
AGAGAAAAACAUUGGCGAAAGCAGAUGAUAAGCCGUGAAGCUAUGCACUGGAAAAAACGAGUGCAAUUUGUGUGCUAACUUCGGCUUAGAUU--------CCAAGUCUAACCUACAUA
...(((...((((.((....)).))))...(((((..((....((((((.(......).)))))).))..)).)))...)))((.((((((.--------....))))))))...... ( -30.60)
>DroSim_CAF1 3504 110 + 1
AGAGAAAAACAUUGGCGAAAGCAGAUGAUAAGCCGUGAAGCUAUACACUGGAAAAAACGAGUGCAAUUUGUGUGCUAACUUCGGCUUAGAUU--------CCAAGUCUAACCUACAUA
..(((....((((.((....)).)))).(((((((...(((((((((((.(......).)))).....)))).))).....)))))))....--------.....))).......... ( -25.50)
>DroEre_CAF1 12411 93 + 1
AGAGGAAAACAUCGGCAAAAGCAGAUGAUAAGCCCUGAAGCAAUACACUGCGAAAAACGAGUGCAAUUUGUGUGCUAACAUCGGCUUAAC-------------------------CUU
.((((....((((.((....)).)))).((((((.((.((((.((((.((((.........))))...))))))))..))..)))))).)-------------------------))) ( -24.60)
>consensus
AGAGAAAAACAUUGGCGAAAGCAGAUGAUAAGCCGUGAAGCAAUACACUGGAAAAAACGAGUGCAAUUUGUGUGCUAACUUCGGCUUAGAUU________CCAAGUCUAACCUACAUA
.........((((.((....)).)))).(((((((((........)))...........((..((.....))..))......)))))).............................. (-19.24 = -19.55 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:29 2006