Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,919,703 – 15,919,804 |
Length | 101 |
Max. P | 0.743580 |
Location | 15,919,703 – 15,919,804 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 81.43 |
Mean single sequence MFE | -22.43 |
Consensus MFE | -16.02 |
Energy contribution | -16.77 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.15 |
Mean z-score | -1.76 |
Structure conservation index | 0.71 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15919703 101 + 22224390 UUUUAUUUCGAUUGGCACAGCAAUUAUUGUAGAAUUUAUUUUACU-----------------CAUUGUAGUAAGUUGUUUAUCAAUGCACUUUCUGCAACGGGCUUACCAGCCAAUUU .........(((((((............((((((....)))))).-----------------..((((((.((((.((........)))))).)))))).((.....)).))))))). ( -22.20) >DroSec_CAF1 18253 101 + 1 UUUUACUUUGGUUGGCACAACAAUUAUUGUAGAAUAUAUUUUACU-----------------CAUUGUAGUAAGUUGUUUAUCAAUGCACUUUCUGCCACGGGCUUACCAGCCAAUUU .......((((((((((..(((((....((((((....)))))).-----------------.)))))(((..((((.....))))..)))...))))..((.....))))))))... ( -21.20) >DroSim_CAF1 3069 101 + 1 UUUUACUUUGGUUGGCACAACAAUUAUUGUAGAAUUUAUUUUACU-----------------CAUUGUAGUAAGUUGUUUAUCAAUGCACUUUCUGCCACGGGCUUACCAGCCAAUUU .......((((((((((..(((((....((((((....)))))).-----------------.)))))(((..((((.....))))..)))...))))..((.....))))))))... ( -21.20) >DroYak_CAF1 3070 118 + 1 UAUUACAUUGGGUGGCACCGCAAUUAUUGUAGAAUUUCUUUUGCUUAAUAUGGAAUUCAGCUCAUUGUGCUUAUAUGUUUAUCAAUGCGUUUUCUGCAACGGCUUACCCAGCCAAUUU .......(((((((((...(((.........(((((((.............)))))))(((.(((((.((......))....))))).)))...)))....)).)))))))....... ( -25.12) >consensus UUUUACUUUGGUUGGCACAACAAUUAUUGUAGAAUUUAUUUUACU_________________CAUUGUAGUAAGUUGUUUAUCAAUGCACUUUCUGCAACGGGCUUACCAGCCAAUUU .........(((((((............((((((....))))))....................((((((.(((.(((........)))))).)))))).((.....)).))))))). (-16.02 = -16.77 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:25 2006