Locus 6250

Sequence ID X_DroMel_CAF1
Location 15,918,448 – 15,918,568
Length 120
Max. P 0.992446
window10183

overview

Window 3

Location 15,918,448 – 15,918,568
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.50
Mean single sequence MFE -36.94
Consensus MFE -34.26
Energy contribution -34.30
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.73
Structure conservation index 0.93
SVM decision value 2.33
SVM RNA-class probability 0.992446
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15918448 120 + 22224390
AAUAAGGAUGAUGGUCUUGAAAUGUUUCAGUCUUGGAAAGACGUUACAAGUCGUAACUCGUUCCUGGACAUACAGGACAUUUUGGCCUCGUCCACCUCCUCUGAGGAAGUUGAAGGUGGU
.....((((((.((((..(((((((((..((((.((((.((.(((((.....))))))).)))).)))).....)))))))))))))))))))(((.(((..((.....))..))).))) ( -41.40)
>DroSec_CAF1 17006 120 + 1
AAUAAGGAUGACGGUCUUGAAAUGUUUCAGUCUUGGAAAGACGUUACAAGUCGUAACUCGUUCUUAGACAUACAGGACAUUUUGGCCUCGUCCACCUCCUCUGAGGAAGUUGAAGGGGGC
.....((((((.((((..(((((((((..((((.((((.((.(((((.....))))))).)))).)))).....))))))))))))))))))).((((((..((.....))..)))))). ( -41.80)
>DroSim_CAF1 1830 120 + 1
AAUAAGGAUGACGGUCUUGAAAUGUUUCAGUCUUGGAAAGACGUUACGAGUCGUAACUCGUUCCUAGACAUACAGGACAUUUUGGCCUCGUCCACCUCCUCUGAGGAAGUUGAAGGUGGC
.....((((((.((((..(((((((((..((((.((((.((.((((((...)))))))).)))).)))).....))))))))))))))))))).((.(((..((.....))..))).)). ( -41.10)
>DroEre_CAF1 10749 120 + 1
AAUAAGAAUGAGGGUCUUGAAAUGUUUCAGUCUUGGAAAGACGUUACCAGUCGUAACUCGUUUCUAGAUAUACAGGACAUUUUGGCCUCUUCCACCUCCUCUGAGGAAGUUGAAGGCGGC
....((((((.(.((((.((((((.....((((.....))))(((((.....))))).)))))).))))...)....)))))).((((((((.((.(((.....))).)).))))).))) ( -30.30)
>DroYak_CAF1 1813 120 + 1
AAUAAGGAUGAGGGUCUUGAAAUGUUUCAGUCUUGGAAAGACGUUAGCAGUCGCAACUCGUUUUUAGACAUACAGGACAUUUUGGCCUCUUCCACUUCCUCAGAGGAACUUGAAGGCGGC
.....(((.((((...(..((((((((..((((..(((.((.(((.((....))))))).)))..)))).....))))))))..))))).))).((.((((((......))).))).)). ( -30.10)
>consensus
AAUAAGGAUGACGGUCUUGAAAUGUUUCAGUCUUGGAAAGACGUUACAAGUCGUAACUCGUUCCUAGACAUACAGGACAUUUUGGCCUCGUCCACCUCCUCUGAGGAAGUUGAAGGCGGC
.....((((((.((((..(((((((((..((((.((((.((.(((((.....))))))).)))).)))).....))))))))))))))))))).((.(((..((.....))..))).)). (-34.26 = -34.30 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:24 2006