Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,730,764 – 1,730,884 |
Length | 120 |
Max. P | 0.858922 |
Location | 1,730,764 – 1,730,884 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.08 |
Mean single sequence MFE | -42.16 |
Consensus MFE | -37.70 |
Energy contribution | -38.86 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.08 |
Mean z-score | -1.40 |
Structure conservation index | 0.89 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858922 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1730764 120 - 22224390 AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGGUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCGAUGUCGACCUCCUUCGUUAUGUCGCUGAUCCGCCUGACGAUGGUU (((((........)))))(((.((((....)))))))...(((((..(((((...(((((.....)))))((((((((((((......)))..)))))))))....)))))..))))).. ( -43.20) >DroSec_CAF1 2017 120 - 1 AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGAUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCGAUGUCGACCUCCUUGGUUAUGUCGCUGAUCCGCCUGACUAUAGUU ((((.......((((..((..(((((....)))))..))..))))...((((...(((((.....)))))(((((((((.((((.....))))))))))))))))))))).......... ( -40.70) >DroSim_CAF1 2216 120 - 1 AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGAUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCGAUGUCGACCUCCUUGGUUAUGUCGCUGAUCCGCCUGACUAUGGUU (((((........)))))....((((...((((((....))))))..(((((...(((((.....)))))(((((((((.((((.....)))))))))))))....)))))...)))).. ( -41.40) >DroEre_CAF1 2136 120 - 1 AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGGUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCAAUGUCGACCUCCUUGGUUAUGUCGCUGAUCCGCCUGACGAUCGUU ((((.......((((...(((.((((....)))))))....))))...((((...(((((.....)))))((((.((((.((((.....)))))))).)))))))))))).......... ( -38.50) >DroYak_CAF1 2222 120 - 1 AGGCAGUCUUCAAUGCCAACCUCCAUCUUGAUGGGGUUGUUCAUCUCCGGGUAGCUACAUAGUGUGUGUACGGCGAUGUCAACCUCCUUGGUUAUGUCGCUGAGUCGCCUGACGAUGGUU .((((........))))((((.((((....))))))))..(((((..((((..(((((((.....)))).(((((((((.((((.....))))))))))))))))..))))..))))).. ( -47.00) >consensus AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGGUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCGAUGUCGACCUCCUUGGUUAUGUCGCUGAUCCGCCUGACGAUGGUU (((((........)))))..((((((....))))))....(((((..(((((...(((((.....)))))(((((((((.((((.....)))))))))))))....)))))..))))).. (-37.70 = -38.86 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:42 2006