Locus 6248

Sequence ID X_DroMel_CAF1
Location 15,914,817 – 15,914,916
Length 99
Max. P 0.552412
window10181

overview

Window 1

Location 15,914,817 – 15,914,916
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 67.59
Mean single sequence MFE -43.36
Consensus MFE -18.98
Energy contribution -20.62
Covariance contribution 1.64
Combinations/Pair 1.40
Mean z-score -1.67
Structure conservation index 0.44
SVM decision value 0.04
SVM RNA-class probability 0.552412
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15914817 99 + 22224390
UAAUGGCGCCUGGGCGCCGCGUUGCAUGAAUGCCGCUGCAGCUGCAUUGGCGGUGGCACCGUUUCCGGGAACGGGACCUGGAGCGGUACCUGGACCGGG
....(((((....)))))(((.(((.....(((((.(((....))).)))))...))).)))..((((...(((((((......))).))))..)))). ( -45.60)
>DroVir_CAF1 7318 84 + 1
UAGCGGAGCCUGAGCAGCGCGCUGCACAAAGGCGGCGGCUGUAGCGGUGGCAGUCACAUUGUUACUGCCAGAUAGACU------GGCACC---------
....((.(((.(.(((((.((((((......))))))))))).(((((((((((...)))))))))))........).------))).))--------- ( -37.30)
>DroGri_CAF1 11312 84 + 1
UAGCGGCGCCUGAGCGGCACGCUGCACAAAGGCGGCGGCAGUAGCGGUGGCAGUCACAGUGUUGCUGCCAGAGAGACU------GGCACC---------
..(((.(((((..((((....))))....))))).)((((((((((.((.......)).)))))))))).........------.))...--------- ( -38.70)
>DroSec_CAF1 13453 99 + 1
UAAUGGCGUCUGGGCGCCGCGCUGCAUGAAUGCCGCUGCAGCUGCAUUGGCGGUGGCUCCGUUUCCGGGUACGGGACAUGGAGCGGCACCUGGACCGGG
.....(.(((..((.(((.((((((...(((((.((....)).))))).))))))((((((((((((....))))).)))))))))).))..))))... ( -52.50)
>DroEre_CAF1 7315 99 + 1
CAAUGGUGCCUGGGCGCCGCGUUGCAUGAAUGCCGCUGCAGCUGCAUUGGCGGUGCCACCGUUACCGGGUACGGGAACUGGAGCAGUACCAGGACCGGG
...((((.((((((((((((..((((....(((....)))..))))...)))))))).(((((.(((....))).))).))........)))))))).. ( -42.70)
>consensus
UAAUGGCGCCUGGGCGCCGCGCUGCAUGAAUGCCGCUGCAGCUGCAUUGGCGGUGACACCGUUACCGGGAACGGGACCUGGAGCGGCACC_GGACCGGG
....(((((....)))))..(((((.....(((((((((....))...)))))))...((((((....))))))........)))))............ (-18.98 = -20.62 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:22 2006