Locus 6247

Sequence ID X_DroMel_CAF1
Location 15,914,099 – 15,914,201
Length 102
Max. P 0.887231
window10180

overview

Window 0

Location 15,914,099 – 15,914,201
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 63.37
Mean single sequence MFE -38.70
Consensus MFE -14.04
Energy contribution -14.88
Covariance contribution 0.84
Combinations/Pair 1.37
Mean z-score -2.26
Structure conservation index 0.36
SVM decision value 0.95
SVM RNA-class probability 0.887231
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15914099 102 - 22224390
----CCAACAGCAUUCGC-----AGCAACAGACUCGCGUCGGAAUGGAUCGUCCAAAUAGUAGCGAAAGCUGCUUUGGUCUCAAUGUGGACUGCGGU---------AGUGUUGUGCUCGA
----...(((((((((((-----(((.((((((....)))..........(.((((..((((((....)))))))))).)....))).).)))))).---------.)))))))...... ( -35.60)
>DroVir_CAF1 6505 112 - 1
AGCAACAACAGCAGCAGC-----AGCAACAGCUUAAAAACAAUUUGGAGCAUACCAACAGCAGCGAGAGCUGCUUUGGGUUAGAGACGGACUGCAGC---AUUGCUAGCGCUGGUGUCGA
.....(.(((.((((.((-----(((((..((((.(((....))).))))...((((.((((((....))))))))))...................---.))))).)))))).))).). ( -38.30)
>DroGri_CAF1 10616 111 - 1
AGCUGGAGCUGGAGCUGUUGGCGAUCAGCAGC---------AGUUGGAGCAUGCCAACAGCAGCGAGACCUGCUUUGCAUUGGACACAGAUCAGAGCAGCAUUGCUGGCGCUGCAGUCGA
.((((.(((....((((((((((.(((((...---------.)))))....))))))))))(((((...((((((((..(((....)))..))))))))..)))))...))).))))... ( -48.20)
>DroSec_CAF1 12737 102 - 1
----CCAACAGCAUCCGC-----AGCAACAGAAUCGUGGCGGAAUGGAUCGUCCAAAUAGUAGCGAAAGCUGCUUUGGCCUCAAUGUGGAUUGCGGC---------AGUGUUGUGCUCGA
----...(((((((((((-----(((.(((.....(.(((.((((((.....)))....(((((....)))))))).))).)..))).).)))))).---------.)))))))...... ( -36.80)
>DroEre_CAF1 6566 102 - 1
----ACAACAGCAUCCGC-----AGCAACAGAAUCGCAGCGGAAUGGAUCGUCCAAAGAGUAGCGAAAGCUGCUUUGGCCUCAAUGUGGAUUGCGGU---------AGUGCCGUCCUCGA
----.........(((((-----.((.........)).)))))..((((.(..(..((((((((....)))))))).(((.((((....)))).)))---------.)..).)))).... ( -34.60)
>consensus
____ACAACAGCAUCCGC_____AGCAACAGAAUCGCAGCGGAAUGGAUCGUCCAAACAGUAGCGAAAGCUGCUUUGGCCUCAAUGUGGAUUGCGGC_________AGUGCUGUGCUCGA
.......(((((((((((............((.(((........))).))(.((((..((((((....)))))))))).)............))))...........)))))))...... (-14.04 = -14.88 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:20 2006