Locus 6245

Sequence ID X_DroMel_CAF1
Location 15,910,322 – 15,910,442
Length 120
Max. P 0.921131
window10175

overview

Window 5

Location 15,910,322 – 15,910,442
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -30.10
Consensus MFE -30.10
Energy contribution -30.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 1.00
SVM decision value 1.14
SVM RNA-class probability 0.921131
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15910322 120 + 22224390
UUUGUGUGUCUACCAUAAUGGUUCAUUAUUUGCUUAUUAGAUCGGUCGGAUACAAUUUCAUCUCGAUCGAGUUAAAAUUUUAAGUUGGUGGACAUUGAUGAUUAGGCGGAUACUUUAUCU
..(((.((((((.(((....((((((((...(((((((((.((((((((((........))).))))))).)))).....)))))))))))))....)))..)))))).)))........ ( -30.10)
>DroSim_CAF1 5486 120 + 1
UUUGUGUGUCUACCAUAAUGGUUCAUUAUUUGCUUAUUAGAUCGGUCGGAUACAAUUUCAUCUCGAUCGAGUUAAAAUUUUAAGUUGGUGGACAUUGAUGAUUAGGCGGAUACUUUAUCU
..(((.((((((.(((....((((((((...(((((((((.((((((((((........))).))))))).)))).....)))))))))))))....)))..)))))).)))........ ( -30.10)
>DroYak_CAF1 6079 120 + 1
UUUGUGUGUCUACCAUAAUGGUUCAUUAUUUGCUUAUUAGAUCGGUCGGAUACAAUUUCAUCUCGAUCGAGUUAAAAUUUUAAGUUGGUGGACAUCGAUGAUUAGGCGGAUACUUUAUCU
..(((.((((((.(((....((((((((...(((((((((.((((((((((........))).))))))).)))).....)))))))))))))....)))..)))))).)))........ ( -30.10)
>consensus
UUUGUGUGUCUACCAUAAUGGUUCAUUAUUUGCUUAUUAGAUCGGUCGGAUACAAUUUCAUCUCGAUCGAGUUAAAAUUUUAAGUUGGUGGACAUUGAUGAUUAGGCGGAUACUUUAUCU
..(((.((((((.(((....((((((((...(((((((((.((((((((((........))).))))))).)))).....)))))))))))))....)))..)))))).)))........ (-30.10 = -30.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:15 2006