Locus 6244

Sequence ID X_DroMel_CAF1
Location 15,909,128 – 15,909,288
Length 160
Max. P 0.990464
window10173 window10174

overview

Window 3

Location 15,909,128 – 15,909,248
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -15.97
Consensus MFE -15.70
Energy contribution -15.70
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.50
Structure conservation index 0.98
SVM decision value 0.16
SVM RNA-class probability 0.614604
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15909128 120 - 22224390
ACAUACAUGCAAAACAAUAACAAAAUAAUGUAUAUGUGUGACCUCAUUAGCACACAAUAAUCGUGUAUGUAUAUCUAUUCUUAGUACCGAACUAUUCAAUCAAUUUAAAACCCCUUACGU
(((((((((..........(((......)))...((((((..........)))))).....)))))))))...........((((.....)))).......................... ( -16.50)
>DroSim_CAF1 4299 120 - 1
ACAUACAUGCAAAACAAUAACAAAAUAAUGUAUAUGUGUGACCUCAUUAGCACACAAUAAUCGUGUAUGUAUAUCUAUUCUUAGUACCGAAAUAUUCAAUCAAUUUAAAACCCCUCACGC
(((((((((..........(((......)))...((((((..........)))))).....))))))))).................................................. ( -15.70)
>DroYak_CAF1 4923 120 - 1
ACAUACAUGCAAAACAAUAACAAAAUAAUGUAUAUGUGUGACCUCAUUAGCACACAAUAAUCGUGUAUGUAUAUCUAUUCUUAGUACCGAAAUAUUCAAUCAAUUUAAAACCCCUUACGU
(((((((((..........(((......)))...((((((..........)))))).....))))))))).................................................. ( -15.70)
>consensus
ACAUACAUGCAAAACAAUAACAAAAUAAUGUAUAUGUGUGACCUCAUUAGCACACAAUAAUCGUGUAUGUAUAUCUAUUCUUAGUACCGAAAUAUUCAAUCAAUUUAAAACCCCUUACGU
(((((((((..........(((......)))...((((((..........)))))).....))))))))).................................................. (-15.70 = -15.70 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 15,909,168 – 15,909,288
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -24.70
Consensus MFE -24.70
Energy contribution -24.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.53
Structure conservation index 1.00
SVM decision value 2.21
SVM RNA-class probability 0.990464
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15909168 120 - 22224390
UAAUUAAAUUAAUGCAUAUCAGUGAUUACAAUAACGAUGUACAUACAUGCAAAACAAUAACAAAAUAAUGUAUAUGUGUGACCUCAUUAGCACACAAUAAUCGUGUAUGUAUAUCUAUUC
.........((((.(((....))))))).......((((((((((((((..........(((......)))...((((((..........)))))).....))))))))))))))..... ( -24.70)
>DroSim_CAF1 4339 120 - 1
UAAUUAAAUUAAUGCAUAUCAGUGAUUACAAUAACGAUGUACAUACAUGCAAAACAAUAACAAAAUAAUGUAUAUGUGUGACCUCAUUAGCACACAAUAAUCGUGUAUGUAUAUCUAUUC
.........((((.(((....))))))).......((((((((((((((..........(((......)))...((((((..........)))))).....))))))))))))))..... ( -24.70)
>DroYak_CAF1 4963 120 - 1
UAAUUAAAUUAAUGCAUAUCAGUGAUUACAAUAACGAUGUACAUACAUGCAAAACAAUAACAAAAUAAUGUAUAUGUGUGACCUCAUUAGCACACAAUAAUCGUGUAUGUAUAUCUAUUC
.........((((.(((....))))))).......((((((((((((((..........(((......)))...((((((..........)))))).....))))))))))))))..... ( -24.70)
>consensus
UAAUUAAAUUAAUGCAUAUCAGUGAUUACAAUAACGAUGUACAUACAUGCAAAACAAUAACAAAAUAAUGUAUAUGUGUGACCUCAUUAGCACACAAUAAUCGUGUAUGUAUAUCUAUUC
.........((((.(((....))))))).......((((((((((((((..........(((......)))...((((((..........)))))).....))))))))))))))..... (-24.70 = -24.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:14 2006