Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,906,833 – 15,906,947 |
Length | 114 |
Max. P | 0.873393 |
Location | 15,906,833 – 15,906,947 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.97 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -22.34 |
Energy contribution | -22.50 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -2.23 |
Structure conservation index | 0.74 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15906833 114 - 22224390 GAAUAUACUAUAAAAAAUGAACACAAA-AAUUGCC--CACAGCUGA---GUCCAUUUACAUAUUUGAUCAGUGUUGCCGAGUAGGCACAGGUACCUGUACCUGGAUAUCAGCUUGUGGCA ...........................-...((((--.((((((((---(((((.................(((.(((.....))))))((((....))))))))).))))).))))))) ( -31.50) >DroSec_CAF1 2380 114 - 1 GCAUAUACUAUUAAAAAUGAACACAAA-AAUUGCC--CACAGCUGU---GUCCAUGUACAUAUUUGAUCAGUGUUGCCGAAUAGCCACAGGUACCUGUACCUGGAUAACAGCUUGUGGCA ...........................-...((((--.((((((((---(((((.(((((......(((.(((..((......))))).)))...))))).))))).))))).))))))) ( -30.40) >DroSim_CAF1 2234 114 - 1 GCAUAUACUAUAAAAAAUGAACACAAA-AAUUGCC--CACAGCUGU---GUCCAUGUACAUAUUUGAUCAGUGUUGCCGAAUAGCCACAGGUACCUGUACCUGGAUAUCAGCUUGUGGCA ...........................-...((((--.((((((((---(((((.(((((......(((.(((..((......))))).)))...))))).)))))).)))).))))))) ( -30.40) >DroEre_CAF1 2299 117 - 1 GCAUAUACUAAAAAAA-UGAAUACAAAAAAUUGAC--UACAGCUGUGCUGUCCAUGUACAUAUUUAAUCAGUGUUGUGGAAUAGCCAUAGGUACCUGUACUUGGAUACCAGCUUGUGGCA ................-..............((.(--((((((((.(.((((((.(((((..............(((((.....)))))(....)))))).))))))))))).))))))) ( -27.80) >DroYak_CAF1 1952 117 - 1 GCAUAUACUAAAUAAAUUGAACACAAAAAACUGCCCCCACAGCUGU---GUCCAUGUACAUAUUUGAUCAGUGUUGUGGAAUAGCCAUAGGUACCUGUACCUGGAUACCAGCUUGUGGCA ....................................((((((((((---(((((.(((((..............(((((.....)))))(....)))))).)))))).)))).))))).. ( -29.90) >consensus GCAUAUACUAUAAAAAAUGAACACAAA_AAUUGCC__CACAGCUGU___GUCCAUGUACAUAUUUGAUCAGUGUUGCCGAAUAGCCACAGGUACCUGUACCUGGAUACCAGCUUGUGGCA ...............................((((...(((((((....(((((.(((((......(((.((((((.....))).))).)))...))))).)))))..)))).))))))) (-22.34 = -22.50 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:12 2006