Locus 6241

Sequence ID X_DroMel_CAF1
Location 15,904,909 – 15,905,009
Length 100
Max. P 0.894353
window10168

overview

Window 8

Location 15,904,909 – 15,905,009
Length 100
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 68.02
Mean single sequence MFE -17.54
Consensus MFE -11.14
Energy contribution -10.90
Covariance contribution -0.24
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.64
SVM decision value 0.98
SVM RNA-class probability 0.894353
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15904909 100 - 22224390
GCAGAUCGGAAGACUGUACAAUGUUCAUCACAUUUGGUGUAAGUGAUAGAUAGUAUAAUUAAAAGAUUUGAGUAAUUUGAGUUUCAUUGCCAA----AUACGUU-----
.((((((....((.(((((..(((..(((((...........)))))..)))))))).))....)))))).(((.((((.((......)))))----))))...----- ( -18.20)
>DroSec_CAF1 379 93 - 1
GCAGAUCGGAAGACUGUACAAUGUCCAUCACAUUUGGUGUAAGUGAUAGAUAGUAUAAUUAAAGAAAU-CCGAAAUU----------UGCCAAUGGUAUACUUU-----
((((((((((...((((((..((((.(((((...........))))).))))))))......))...)-))))..))----------)))..............----- ( -16.90)
>DroSim_CAF1 270 76 - 1
GCAGAUCGGAAGACUGUACAAUGUCCAUCACAUUUGGUGUAAGUGAUUAAUAAUAUAAUUACAAAAAU-CAGAAAUU--------------------------------
((((.((....))))))...............((((((....(((((((......)))))))....))-))))....-------------------------------- ( -15.60)
>DroEre_CAF1 408 95 - 1
GCAGAUCGGAAGACUGUACAAUGUCCACCACAUUUGGUGUAAGUAAAUCAUGAUUUACUUCUAUAAAU-UCAAAAAU----------C---AAAAAGAUAUUUAUCAGU
((((.((....))))))..(((((((((((....))))).((((((((....))))))))........-........----------.---.....))))))....... ( -20.40)
>DroYak_CAF1 183 75 - 1
GCAGAUCGGAAGACUGUACAAUGUCCACCACAUUUGGUGUAAGUAACUCAUGAUUUACUUGUAUAGAU-UUAAAAU---------------------------------
.....((....))((((((......(((((....))))).((((((........))))))))))))..-.......--------------------------------- ( -16.60)
>consensus
GCAGAUCGGAAGACUGUACAAUGUCCAUCACAUUUGGUGUAAGUGAUUCAUAAUAUAAUUAAAAAAAU_CAGAAAUU______________AA____AUA__U______
((((.((....))))))........(((((....)))))...................................................................... (-11.14 = -10.90 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:09 2006