Locus 6240

Sequence ID X_DroMel_CAF1
Location 15,900,482 – 15,900,586
Length 104
Max. P 0.563746
window10167

overview

Window 7

Location 15,900,482 – 15,900,586
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 94.42
Mean single sequence MFE -31.40
Consensus MFE -26.02
Energy contribution -26.62
Covariance contribution 0.60
Combinations/Pair 1.07
Mean z-score -1.36
Structure conservation index 0.83
SVM decision value 0.06
SVM RNA-class probability 0.563746
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15900482 104 + 22224390
CAUUCCCAAAUGCCAAUCGAGGCGUCUAACGCUCCGCACAGCCCCAUUCCCACGAAAAUGAGUCGGGGUAAAAUACCCAUGGAGACACCGGGCAGCAUGGAGUU
.(((((...((((....((..(((.....)))..))....((((...((((((((.......)))(((((...))))).))).))....)))).))))))))). ( -31.60)
>DroSec_CAF1 7950 104 + 1
CAUUCCCAAAUACCAGUCGAGGCGUCUAACGCUCCGCACAGCCCCAUUCCCACGAAAAUGAGUCGGGGUAAAAUAACCAUGGAGACACCGGGCAGCAUGGAGUU
.(((((.........((((..(((.....)))..)).)).((((....(((.(((.......))))))...........((....))..)))).....))))). ( -29.20)
>DroSim_CAF1 7647 104 + 1
CAUUCCCAAAUGCCAGUCGAGGCGUCUAACGCUCCGCACAGCCCCAUUCCCACGAAAAUGAGUCGGGGUAAAAUAACCAUGGAGACACCGGGCAGCAUGGAGUU
.(((((...((((..((((..(((.....)))..)).)).((((....(((.(((.......))))))...........((....))..)))).))))))))). ( -32.30)
>DroEre_CAF1 23968 104 + 1
CAUUCCCAAUUGCCAGUCGAGGCGUCUAACGCUCCGUACAGUCCCAUUCCCACGAAAAUGAGUCGGGAUAAAAUACCCGUGGAGACACCGGGCAGCAUGGAGUU
.(((((...(((((.((((..(((.....)))..)).)).(((((((((((((........)).))))..........)))).)))....)))))...))))). ( -33.20)
>DroYak_CAF1 8317 104 + 1
CAUUCCCAAAUGCCAGUCGAGGCGUCUAACGCUCCGUACAGCUCCAUUACCACGAAAAUGAGCCGGGAUAAAAUACCCAUGGAGACACCAGGCAGCGUGGAGUU
.(((((....((((.((((..(((.....)))..)).)).(((((((...((......))....(((........))))))))).)....))))....))))). ( -30.70)
>consensus
CAUUCCCAAAUGCCAGUCGAGGCGUCUAACGCUCCGCACAGCCCCAUUCCCACGAAAAUGAGUCGGGGUAAAAUACCCAUGGAGACACCGGGCAGCAUGGAGUU
.(((((....((((.((((..(((.....)))..)).)).(((((((((..........)))).)))))..........((....))...))))....))))). (-26.02 = -26.62 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:08 2006