Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,730,366 – 1,730,485 |
Length | 119 |
Max. P | 0.915988 |
Location | 1,730,366 – 1,730,485 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.32 |
Mean single sequence MFE | -44.92 |
Consensus MFE | -35.96 |
Energy contribution | -36.76 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.19 |
Structure conservation index | 0.80 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1730366 119 + 22224390 AGGUUAAAGGGGAGGACGGCAAAGUGGAGAAGAUGCUGCUAUUCUACGACGGGGAGACGGUAUCCGGCAAGGUGCGUCGUGGUCAGCAUCGGGGGGAGUUCC-CCCAAGCAUAACCAGAG .(((((...(......).((...........(((((((.....(((((((..(....).(((((......)))))))))))).))))))).(((((....))-)))..)).))))).... ( -44.80) >DroSec_CAF1 1619 119 + 1 AGGUUAAAGGGGAGGACGGCAAAGUGGAGAAGAUGCUGCUAUUCUACGACGGGGAGACGGUAUCCGGCAAGGUGCGUCGUGGUCAGCAUCGGGGGGAGUUCC-CCCAAGCAUAACCAGAG .(((((...(......).((...........(((((((.....(((((((..(....).(((((......)))))))))))).))))))).(((((....))-)))..)).))))).... ( -44.80) >DroSim_CAF1 1818 119 + 1 AGGUUAAAGGGGAGGACGGCAAAGUGGAGAAGAUGCUGCUAUUCUACGACGGGGAGACGGUAUCCGGCAAGGUGCGUCGUGGUCAGCAUCGGGGGGAGUUCC-CCCAAGCAUAACCAGAG .(((((...(......).((...........(((((((.....(((((((..(....).(((((......)))))))))))).))))))).(((((....))-)))..)).))))).... ( -44.80) >DroEre_CAF1 1737 120 + 1 AGGUUAAAGGGGAGGACGGCAAAGUGGAGAAGAUGCUGCUCUUCUACGACGGAGAGACGGUAUCCGGCAAGGUGCGUCGUUGUCAGCAUCGGGGGGAGUUCCCCCCAAGAAUUACCAGAG .(((....(..((.((((((...........(((((((((((((......)))))).)))))))..((.....)))))))).))..)...((((((....)))))).......))).... ( -47.40) >DroYak_CAF1 1823 119 + 1 AGGUUAAAGGGGAGGACGGCAAAGUGGAGAAGAUGCUGCUCUUCUACGACGGGGAGACGGUAUCCGGCAAGGUGCGUCGUGGUCAGCAUCCGGGGGAGUUCC-CCCAAGCAUUACCAGAG .(((....((((..(((.((...........(((((((((((((......)))))).))))))).(((.......))))).)))..).)))(((((....))-))).......))).... ( -42.80) >consensus AGGUUAAAGGGGAGGACGGCAAAGUGGAGAAGAUGCUGCUAUUCUACGACGGGGAGACGGUAUCCGGCAAGGUGCGUCGUGGUCAGCAUCGGGGGGAGUUCC_CCCAAGCAUAACCAGAG .(((((.........................(((((((.....(((((((..(....).(((((......)))))))))))).))))))).(((((....)).))).....))))).... (-35.96 = -36.76 + 0.80)
Location | 1,730,366 – 1,730,485 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.32 |
Mean single sequence MFE | -35.90 |
Consensus MFE | -29.24 |
Energy contribution | -29.64 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.81 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.915988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1730366 119 - 22224390 CUCUGGUUAUGCUUGGG-GGAACUCCCCCCGAUGCUGACCACGACGCACCUUGCCGGAUACCGUCUCCCCGUCGUAGAAUAGCAGCAUCUUCUCCACUUUGCCGUCCUCCCCUUUAACCU ....(((((.....(((-((.....)))))(((((((.(.(((((((.....)).(((.......)))..))))).).....))))))).........................))))). ( -34.60) >DroSec_CAF1 1619 119 - 1 CUCUGGUUAUGCUUGGG-GGAACUCCCCCCGAUGCUGACCACGACGCACCUUGCCGGAUACCGUCUCCCCGUCGUAGAAUAGCAGCAUCUUCUCCACUUUGCCGUCCUCCCCUUUAACCU ....(((((.....(((-((.....)))))(((((((.(.(((((((.....)).(((.......)))..))))).).....))))))).........................))))). ( -34.60) >DroSim_CAF1 1818 119 - 1 CUCUGGUUAUGCUUGGG-GGAACUCCCCCCGAUGCUGACCACGACGCACCUUGCCGGAUACCGUCUCCCCGUCGUAGAAUAGCAGCAUCUUCUCCACUUUGCCGUCCUCCCCUUUAACCU ....(((((.....(((-((.....)))))(((((((.(.(((((((.....)).(((.......)))..))))).).....))))))).........................))))). ( -34.60) >DroEre_CAF1 1737 120 - 1 CUCUGGUAAUUCUUGGGGGGAACUCCCCCCGAUGCUGACAACGACGCACCUUGCCGGAUACCGUCUCUCCGUCGUAGAAGAGCAGCAUCUUCUCCACUUUGCCGUCCUCCCCUUUAACCU ....(((((.....((((((....))))))(((((((.(.(((((((.....)).(((.........)))))))).).....))))))).........)))))................. ( -39.40) >DroYak_CAF1 1823 119 - 1 CUCUGGUAAUGCUUGGG-GGAACUCCCCCGGAUGCUGACCACGACGCACCUUGCCGGAUACCGUCUCCCCGUCGUAGAAGAGCAGCAUCUUCUCCACUUUGCCGUCCUCCCCUUUAACCU ....(((((.....(((-((....)))))((((((((..((((((((.....)).(((.......)))..)))))....)..))))))))........)))))................. ( -36.30) >consensus CUCUGGUUAUGCUUGGG_GGAACUCCCCCCGAUGCUGACCACGACGCACCUUGCCGGAUACCGUCUCCCCGUCGUAGAAUAGCAGCAUCUUCUCCACUUUGCCGUCCUCCCCUUUAACCU ....(((((.....(((.((....))))).(((((((.(.((((((......(.(((...))).)....)))))).).....))))))).........................))))). (-29.24 = -29.64 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:41 2006