Locus 6239

Sequence ID X_DroMel_CAF1
Location 15,899,333 – 15,899,453
Length 120
Max. P 0.618175
window10166

overview

Window 6

Location 15,899,333 – 15,899,453
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -29.94
Consensus MFE -26.76
Energy contribution -26.72
Covariance contribution -0.04
Combinations/Pair 1.03
Mean z-score -1.24
Structure conservation index 0.89
SVM decision value 0.17
SVM RNA-class probability 0.618175
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15899333 120 + 22224390
UGCAGUAAUUUAAAUGGUAAAGAAAAGAGGGAAAUAUACGCUGAGCCAUCGACAAGAUUCAGUGCCAGAAAGCAGCUGAGUUUUCUCGGAACUAAGAUGAAGGUUACUGAUUUCUCUCGA
..........................(((((((((........((((.((((.((((((((((((......))).))))))))).))))..(......)..))))....))))))))).. ( -29.40)
>DroSec_CAF1 6802 120 + 1
UGCAGUAAUUUAAAUGGUAAAGAAAAGAGGGAAAUAUUCGCUGAGCCAUCGACAAGAUUCAGGGCCAGAAAGCAGCUGAGUUUUCUCGGAACUAAGAUGAAGGUUACUGAUUUCUCUCGA
..(((((((((...((((..((....(((.......))).))..))))((((.(((((((((.((......))..))))))))).))))...........)))))))))........... ( -28.70)
>DroSim_CAF1 6485 120 + 1
UGCAGUAAUUUAAAUGUUAAAGAAAAGAGGGAAAUAUUCGCUGAGCCAUCGACAAGAUUCAGUGCCAGAAAGCAGCUGAGUUUUCUCGGAACUAAGAUGAAGGUUACUGAUUUCUCUCGA
..........................(((((((((........((((.((((.((((((((((((......))).))))))))).))))..(......)..))))....))))))))).. ( -29.40)
>DroEre_CAF1 22790 120 + 1
UGCAGUAAUUUAAAUGGUAAAGAAAAGAGGGAAAUUGUCGCUCAGCGAUCGACAAGAUUCGGUGCCAGAAAGCAGCUGAGUUUUCUCGGAACUAAGAUGAAGGUUACUGAUUUCUCUCGA
..........................(((((((((((((((...)))))(((.((((((((((((......))).))))))))).))).((((........))))...)))))))))).. ( -31.10)
>DroYak_CAF1 7145 120 + 1
UGCAGUAAUUUAAAUGGUAAAGAAAAGAGGGAAAUUGUCGCUCAGCGAUCGACAAGAUUCGGUGCCGGAAAGCAGCUGAGUUUUCUCGGAACUAAGAUGAAGGUUACUGAUUUCUCUCGA
..........................(((((((((((((((...)))))(((.((((((((((((......))).))))))))).))).((((........))))...)))))))))).. ( -31.10)
>consensus
UGCAGUAAUUUAAAUGGUAAAGAAAAGAGGGAAAUAUUCGCUGAGCCAUCGACAAGAUUCAGUGCCAGAAAGCAGCUGAGUUUUCUCGGAACUAAGAUGAAGGUUACUGAUUUCUCUCGA
..........................(((((((((.............((((.((((((((((((......))).))))))))).))))((((........))))....))))))))).. (-26.76 = -26.72 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:07 2006