Locus 6237

Sequence ID X_DroMel_CAF1
Location 15,892,002 – 15,892,113
Length 111
Max. P 0.793721
window10159

overview

Window 9

Location 15,892,002 – 15,892,113
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.69
Mean single sequence MFE -25.94
Consensus MFE -18.94
Energy contribution -20.62
Covariance contribution 1.68
Combinations/Pair 1.26
Mean z-score -1.64
Structure conservation index 0.73
SVM decision value 0.59
SVM RNA-class probability 0.793721
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15892002 111 - 22224390
CCGUAUCAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGCAAUAUUAGAAGGCAACGAUAAGAUAUUAGUUGUGAUUUCUUCGGUUAUAUUUUGUUUGG---UUAACUUUGAAC------
(((...(((((((((((((((.(((((((((((...)))))))))))(((((((((............)))))..)))))))))))))))))))..)))---............------ ( -30.00)
>DroSec_CAF1 295 111 - 1
CCGUAUAAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGAAAUAUUAGAAGACAACGAUAAUAUAUUAGUUGUGCUUUCCUCGGUUAUAUUUUGUUUGG---UUAACUUUGAAC------
(((....((((((((((((((..(((((((((...(((....))).....)))))))(((((......)))))..))..))))))))))))))...)))---............------ ( -25.50)
>DroSim_CAF1 220 111 - 1
CCGUAUAAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGAAAUAUUAGAAGACAACGAUAAGAUAUUAGUUGUGCUUUCCUCGGUUAUAUUUUUUUUGG---UUAACUUUGAAC------
(((...(((((((((((((((.(((((((...........)))))))(((((((((............))))).)))).)))))))))))))))..)))---............------ ( -26.10)
>DroEre_CAF1 15618 120 - 1
CCGUAUACGAAUGUGGCUGAGUUAAAGAUGUUGAGUUAUCAAUAUUGGAAGGCAACAAUAAAUUAUUGGUUGUGCUUUUCUCGGUAAAAUUUUCUUUGGUGCUUAAUUUUGGAAAUAUAG
..((((..(((.((.(((((......((((((((....))))))))((((((((.(((((...)))))....)))))))))))))...)).)))....)))).................. ( -25.80)
>DroYak_CAF1 225 120 - 1
CCAUCUUAGAAUAUGGCUGAGUUAAUGUUGCUGACUUAUCAAUAUUAGACUGCACUAAUAAAUUCUGUAUUGUAGUUUUCUCAAUACUAUUUUGUUUAGUGCUUAACUUUAAAAAUGUAA
....(((((.......)))))(((((((((.........)))))))))...(((((((((((....((((((.((....))))))))...)))).))))))).................. ( -22.30)
>consensus
CCGUAUAAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGCAAUAUUAGAAGGCAACGAUAAAAUAUUAGUUGUGCUUUCCUCGGUUAUAUUUUGUUUGG___UUAACUUUGAAC______
(((...(((((((((((((((((((((((((((...))))))))))))...(((((............)))))......)))))))))))))))..)))..................... (-18.94 = -20.62 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:00 2006