Locus 6236

Sequence ID X_DroMel_CAF1
Location 15,843,179 – 15,843,299
Length 120
Max. P 0.523487
window10158

overview

Window 8

Location 15,843,179 – 15,843,299
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.25
Mean single sequence MFE -28.93
Consensus MFE -21.04
Energy contribution -20.88
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -1.69
Structure conservation index 0.73
SVM decision value -0.02
SVM RNA-class probability 0.523487
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15843179 120 - 22224390
AGCAAAACAUCCAUCGUGCGAAGCCAAUGGCUUUAAUAAAUAUAAGAAGAAGCCAAAGUUCAGAUUUAAAUCUGGAUCCUUUACGCGAAGUAUUCGUUUUGGAUUAUAGAUGUGUCCUGU
.(((..(((((..(((((..(((....(((((((..............)))))))..((((((((....)))))))).)))..))))).(((.((......)).))).)))))....))) ( -29.04)
>DroSec_CAF1 5479 120 - 1
AGCAUAACAUGCAUCGUGCGAAGCCAAUGGCUUUAAUAAAUAUAAAAAGAAGGCAAAGUUCAGAUUGGAAUCUGGAUCCUUUACGCGAAGUAUUCGUGUUGGAUUAUAGAUAUGUCCUGU
(((((...((((.(((((.((((((...))))))..............(((((....((((((((....))))))))))))).))))).))))..)))))((((.........))))... ( -30.70)
>DroSim_CAF1 3207 120 - 1
AGCGAAACAUGCUUCGUGCGAAGCCAAUGGCUUUAAUAAAUAUAAGAAGAAGGCAAAGUUCAGAUUGGAAUCUGGAUCCUUUACGCGAAGUAUUCGUUUUGGAUUAUAGAUAUGUCCUGU
(((((...((((((((((.((((((...))))))..............(((((....((((((((....))))))))))))).)))))))))))))))..((((.........))))... ( -35.00)
>DroEre_CAF1 5906 120 - 1
AGCAAAACAUGUAUCAUGCGAAGCCAAUGGUUUGAAUAAAUAUAAGAAAAAGGCAAAGUUCAGAUUAGAAUCUGGAUCCUUAACGCAAAGUAUUCUUUUCGGAUUAUAUAUGUGUCCUGU
.(((..((((((((.((.(((((..((((.((((...............((((....((((((((....))))))))))))....)))).))))..))))).)).))))))))....))) ( -25.81)
>DroYak_CAF1 2851 120 - 1
AGCAAAACAUGUAUCAUGCGAAGCCAAUGGCUUGAAUAAAUAGAAGAAAGAGGCAAAGUUCAAAUUGGAAUCUGGAUCCUUAACGCAUAGUAUUCUUUUUGGAUUAUAUAUGUGUCCUGU
.(((..((((((((.((((((((((...)))))................((((...(((((......))).))....))))..))))).(((.(((....))).)))))))))))..))) ( -24.10)
>consensus
AGCAAAACAUGCAUCGUGCGAAGCCAAUGGCUUUAAUAAAUAUAAGAAGAAGGCAAAGUUCAGAUUGGAAUCUGGAUCCUUUACGCGAAGUAUUCGUUUUGGAUUAUAGAUGUGUCCUGU
.(((..((((......(((((((((...)))))...............(((((....((((((((....))))))))))))).))))..(((.((......)).)))....))))..))) (-21.04 = -20.88 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:59 2006