Locus 6235

Sequence ID X_DroMel_CAF1
Location 15,837,774 – 15,837,886
Length 112
Max. P 0.683384
window10157

overview

Window 7

Location 15,837,774 – 15,837,886
Length 112
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 79.11
Mean single sequence MFE -32.40
Consensus MFE -19.68
Energy contribution -21.76
Covariance contribution 2.08
Combinations/Pair 1.21
Mean z-score -1.80
Structure conservation index 0.61
SVM decision value 0.31
SVM RNA-class probability 0.683384
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15837774 112 - 22224390
UGAACAGAGAUC--AUAAGCCUAACAAUGGCGGACCUAAUACAUUUGGGAAACAUUGAUGUUGUCAUCCAGAAAGAUAAGCCCGGAUCGCCAACGGGCUGUUCGGAUGAUGGGA
......((.(((--(...(((.......)))...(((((.....)))))......)))).))(((((((.(((.....((((((.........)))))).)))))))))).... ( -34.90)
>DroVir_CAF1 7008 111 - 1
ACACC---ACAAGAAAUAACCAAUCAAUGGCAGAUUUAAUGCGUUUGGGUAAUGUGGACGUUGUCAUACAGAAAGAUAAACUUGGCUCGCCAACGGGCGGCUCCGAUGACGGCA
...((---((((....).(((...(((..(((.......)))..))))))..)))))..((((((((.(...(((.....)))(((.((((....)))))))..))))))))). ( -29.00)
>DroSim_CAF1 2533 112 - 1
UGAACAGAGAUC--AUAAGCCAAACAAUGGCGGACCUAAUACAUUUGGGAAACAUUGAUGUUGUCAUCCAGAAAGAUAAGCCCGGAUCGCCAACGGGCUGUUCGGAUGAUGGGA
......((.(((--(...((((.....))))...(((((.....)))))......)))).))(((((((.(((.....((((((.........)))))).)))))))))).... ( -35.60)
>DroYak_CAF1 3284 112 - 1
UGAACAGAGCCC--AUAAGCCAAACAAUGGCGGACCUAAUACAUUUGGGAAAUAUCGAUGUGGUCAUCCAGAAAGAUAAGCCCGGAUCGCCAACGGGCUGUUCGGAUGAUGGUA
........((((--(((.((((.....))))...(((((.....))))).........))))(((((((.(((.....((((((.........)))))).))))))))))))). ( -36.90)
>DroMoj_CAF1 5415 104 - 1
--------ACAA--AAAUACCAAUCAAUGGCAGAUCUAAUGCGUUUGGGUAAUGUGGACGUUGUCAUACAGAAAGAUAAACUCGGCUCGCCAACGGGCGGCUCCGAUGACGGCA
--------....--.....(((.((((..(((.......)))..))))......)))..((((((((.(.....((.....))(((.((((....)))))))..))))))))). ( -25.60)
>consensus
UGAACAGAGCAC__AUAAGCCAAACAAUGGCGGACCUAAUACAUUUGGGAAAUAUGGAUGUUGUCAUCCAGAAAGAUAAGCCCGGAUCGCCAACGGGCUGUUCGGAUGAUGGCA
..................((((.....))))...(((((.....)))))..........((((((((((.(((.....((((((.........)))))).))))))))))))). (-19.68 = -21.76 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:58 2006