Locus 6232

Sequence ID X_DroMel_CAF1
Location 15,833,187 – 15,833,307
Length 120
Max. P 0.619195
window10151

overview

Window 1

Location 15,833,187 – 15,833,307
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -43.82
Consensus MFE -42.75
Energy contribution -42.62
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.48
Structure conservation index 0.98
SVM decision value 0.17
SVM RNA-class probability 0.619195
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15833187 120 + 22224390
CGAGUACCAGCGCAAGUUGCAGGAGGUGAACGUGCGUCCGAUCAAGAAGGUCAUGGAGGCCAAGGCGCGCAAGCAUCGUCGUGCCACGAAACGCUUGGCCAAGGCUAAGAAGAUGGCCGA
.......((((....))))..(((.((......)).)))((((.....)))).....(((((.(((((((.......).))))))........((((((....))))))....))))).. ( -43.30)
>DroSec_CAF1 5310 120 + 1
CGAGUACCAGCGCAAGUUGCAGGAGGUGAACGUGCGCCCGAUCAAGAAGGUCAUGGAGGCCAAGGCGCGCAAGCAUCGUCGCGCCACGAAACGCUUGGCCAAGGCUAAGAAGAUGGCCGA
......((((((((..(..(.....)..)...)))))..((((.....)))).))).(((((.(((((((.......).))))))........((((((....))))))....))))).. ( -46.80)
>DroEre_CAF1 6043 120 + 1
CGAGUACCAGCGCAAGUUGCAGGAGGUGAAUGUGCGCCCAAUCAAGAAGGUCAUGGAGGCCAAGGCACGCAAGCACCGUCGUGCCACAAAACGCUUGGCCAAGGCUAAGAAGAUGGCCGA
.......((((....)))).....((((..((((.((((......)..((((.....))))..))).))))..)))).(((.((((.......((((((....))))))....))))))) ( -42.30)
>DroYak_CAF1 5255 120 + 1
CGAGUACCAGCGCAAGUUGCAGGAGGUGAACGUGCGCCCCAUCAAGAAGGUCAUGGAGGCCAAGGCACGCAAGCACCGUCGUGCCACCAAACGCUUGGCCAAGGCUAAGAAGAUGGCCGA
...(.((((((....)))...((.((((......))))))........)))).....(((((.(((((((.......).))))))........((((((....))))))....))))).. ( -42.90)
>consensus
CGAGUACCAGCGCAAGUUGCAGGAGGUGAACGUGCGCCCGAUCAAGAAGGUCAUGGAGGCCAAGGCACGCAAGCACCGUCGUGCCACGAAACGCUUGGCCAAGGCUAAGAAGAUGGCCGA
......((((((((..(..(.....)..)...)))))..((((.....)))).))).(((((.(((((((.......).))))))........((((((....))))))....))))).. (-42.75 = -42.62 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:52 2006