Locus 6231

Sequence ID X_DroMel_CAF1
Location 15,831,320 – 15,831,440
Length 120
Max. P 0.973541
window10150

overview

Window 0

Location 15,831,320 – 15,831,440
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.00
Mean single sequence MFE -46.32
Consensus MFE -41.28
Energy contribution -42.64
Covariance contribution 1.36
Combinations/Pair 1.02
Mean z-score -1.74
Structure conservation index 0.89
SVM decision value 1.71
SVM RNA-class probability 0.973541
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15831320 120 - 22224390
AGCCAGUUCCUACCCACAUUGGGAGCACCGUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUGUCCUCGACGAGACCA
.(((((((.((..(((....((((((.(.((((((((((.(......)))..)))))))).)..)))))))))..)).)))))))((..(((.((((.((......)))))).))).)). ( -45.80)
>DroSec_CAF1 3443 120 - 1
AGCCAGUUCCUACCCACAUUGGGUGCACCGUCGUGGAGCACAACGUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUGUCCUCGACGAGGCCA
.(((((((.((..(((....((.((((..((((((((((.(......)))..)))))))))))).))...)))..)).)))))))(((.(((.((((.((......)))))).)))))). ( -48.10)
>DroSim_CAF1 3436 120 - 1
AGCCAGUUCCUACCCACAUUGGGUGCACCGUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUGUCCUCGACGAGGCCA
.(((((((.((..(((....((.((((..((((((((((.(......)))..)))))))))))).))...)))..)).)))))))(((.(((.((((.((......)))))).)))))). ( -48.10)
>DroEre_CAF1 4182 120 - 1
AGCCAGUUCCUGCCCACAUUGGGAGCACCAUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUUGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUAUCCUCAACGAGGCCA
.(((((((.(((...(((..((((((.(.((((((((((.(......)))..)))))))).)..)))))).)))))).)))))))(((....((((..((......))....))))))). ( -46.90)
>DroYak_CAF1 3385 120 - 1
AACCAGUUCCUGCCCACAUUGGGAGCACCAUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCCGUGGUGAUGUCCUCAACGAGGCCA
..((((((.(((.(((....((((((.(.((((((((((.(......)))..)))))))).)..))))))))).))).)))))).(((.(((....(.((......)).)...)))))). ( -42.70)
>consensus
AGCCAGUUCCUACCCACAUUGGGAGCACCGUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUGUCCUCGACGAGGCCA
.(((((((.((..(((....((((((.(.((((((((((.(......)))..)))))))).)..)))))))))..)).)))))))(((.(((.((((.((......)))))).)))))). (-41.28 = -42.64 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:51 2006