Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,830,966 – 15,831,080 |
Length | 114 |
Max. P | 0.999980 |
Location | 15,830,966 – 15,831,080 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 95.33 |
Mean single sequence MFE | -34.31 |
Consensus MFE | -33.52 |
Energy contribution | -33.80 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -2.79 |
Structure conservation index | 0.98 |
SVM decision value | 5.24 |
SVM RNA-class probability | 0.999980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15830966 114 + 22224390 AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUGAUUUUUAUCGUAAUUGUACGAAAAGCCAGCAGCAAUGGGCAAGAAGACGAAAGU ....(.(((..((((((((....(((((((((((((((........))))))))))...(((....)))......)))))....))))))))...))).)......((....)) ( -37.10) >DroSec_CAF1 3090 113 + 1 AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUGAUU-UUAUCGUGAUUGUACGAAAAGCCAGCAGCAAUGGGCAAGAAGACGAAAGU ....(.(((..((((((((....(((((((((((((((........))))))))))...(((.-..)))......)))))....))))))))...))).)......((....)) ( -35.70) >DroSim_CAF1 3083 113 + 1 AUACGGCCACAUUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUGAUU-UUAUCGUGAUUUUACGGAAAGCCAGCAGCAAUGGGCAAGAAGACGAAAGU .....(((.(((((((((((.....)))((((((((((........)))))))))).(((..(-((.(((((....))))))))..))))))))))))))......((....)) ( -32.50) >DroEre_CAF1 3829 113 + 1 AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUUGUUUUUAUU-UGAUCGUGUUUGUACGAAAAGCCAGCAGCAAUGGGCAAGAAAACGAAAGU ....(.(((..((((((((..((.(((.((((((((((........))))))))))...))).-)).(((((....)))))...))))))))...))).)......((....)) ( -32.70) >DroYak_CAF1 3032 113 + 1 AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUUAUU-UAAUCGUUAUUGUACGCAAAGCCAGCAGCAAUGGGCAAGAAAACGAAAGU ....(.(((..((((((((....(((((((((((((((........)))))))))).......-...........)))))....))))))))...))).)......((....)) ( -33.56) >consensus AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUGAUU_UUAUCGUGAUUGUACGAAAAGCCAGCAGCAAUGGGCAAGAAGACGAAAGU ....(.(((..((((((((....(((((((((((((((........))))))))))..((((....)))).....)))))....))))))))...))).)......((....)) (-33.52 = -33.80 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:50 2006