Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,729,899 – 1,730,011 |
Length | 112 |
Max. P | 0.633837 |
Location | 1,729,899 – 1,730,011 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 82.97 |
Mean single sequence MFE | -26.05 |
Consensus MFE | -22.08 |
Energy contribution | -21.89 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.13 |
Mean z-score | -1.50 |
Structure conservation index | 0.85 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1729899 112 - 22224390 CUGAUUGUUAUUAAGGAGUGCCAGCGCUGGUACUUUUCAGUAUUCAGUAUUUGCAUGGUAUUUCU-UUAAGAAACACAUA--CGGAAUA----AUUAACGAAACAAUUGAUUGUGGAUC (((((((((.((((((((((((((((((((((((....)))).)))))....)).))))).))))-))))..)))).)).--))).(((----(((((........))))))))..... ( -25.50) >DroSec_CAF1 1149 113 - 1 CCGAUUGUUAUUAAGGAGUGCCAGCGCUGGUACUUUUUAGUAUUCAGUAUUUGCACGGUAUUUUUUUUUUAAAACACAUA--CGGAAAA----UUUAACGAAACAAUUGAUUGUGGAUC .((((((((((((((((((((((....))))))))))))))..............((.((..(((((..((.......))--..)))))----..)).)).)))))))).......... ( -25.60) >DroSim_CAF1 1349 112 - 1 CCGAUUGUUAUUAAGGAGUGCCAGCGCUGGUACUUUUUAGUAUUCAGUAUUUGCAUGGUAUUUCU-UUAAAAAACACAUA--CGGAAAA----UUUAACGAAACAAUUGAUUGUGGAUC .((((((((...((((((((((((((((((((((....)))).)))))....)).))))))))))-).............--((.....----.....)).)))))))).......... ( -27.80) >DroEre_CAF1 1268 117 - 1 CCGAGUGUUAUAAAGGAGUGCCAGCGCUGGUACUUUUCAGUAUUCAGUAUUUGCAUGGUAUUCUU-CAAAGAUUCUUCUUCAUGGUAUUCUUCUUCAACAAAACAAUUA-UUACCGAUA ..(((((..((..(((((((((((((((((((((....)))).)))))....)).))))))))))-..((((....)))).))..)))))...................-......... ( -25.30) >consensus CCGAUUGUUAUUAAGGAGUGCCAGCGCUGGUACUUUUCAGUAUUCAGUAUUUGCAUGGUAUUUCU_UUAAAAAACACAUA__CGGAAAA____UUUAACGAAACAAUUGAUUGUGGAUC .((((((((....(((((((((((((((((((((....)))).)))))....)).)))))))))).................((..............)).)))))))).......... (-22.08 = -21.89 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:39 2006