Locus 6229

Sequence ID X_DroMel_CAF1
Location 15,830,511 – 15,830,626
Length 115
Max. P 0.999038
window10148

overview

Window 8

Location 15,830,511 – 15,830,626
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.48
Mean single sequence MFE -31.25
Consensus MFE -18.06
Energy contribution -20.06
Covariance contribution 2.00
Combinations/Pair 1.17
Mean z-score -2.97
Structure conservation index 0.58
SVM decision value 3.34
SVM RNA-class probability 0.999038
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15830511 115 + 22224390
CAGAUAAUCUAUACACGUAAUAGAAAGAGAUGGAGCAUCUGUAGAUACACUUGCUCUUCUUUAAUUAAAACUAU-CUGGCUCACAGAUAGAAAUCAUUCUUUUAUGUGGGGU----UGGU
....((((((...(((((((.(((((((((.((((((..(((....)))..)))))))))))........((((-(((.....)))))))......)))).)))))))))))----)).. ( -36.10)
>DroSec_CAF1 2636 119 + 1
CAUAUAAUCUAUACACGUAAUAGAAAGAGAUGGAGCAUCUGUAGAUACACUUGCUCUUCUUUGAUUAAAACUAU-CUGGCUCACAGAUGGAAAUCAUUCUUUUAUGUGUGGUUGGUUGGU
....(((((..(((((((((.(((((((((.((((((..(((....)))..)))))))))))((((....((((-(((.....))))))).)))).)))).)))))))))...))))).. ( -39.90)
>DroSim_CAF1 2633 116 + 1
CGGAUAAUCUAUACACGUAAUAGAAAGAGAUGGAGCAUCUGUAAAUACACUUGCUCUUCUUUGAUUAAAACUAUUCUGGCUCACACAUGGAAAAAAUUCUUUUAUGUGUGGU----UGGU
.......(((((.......))))).(((((.((((((..(((....)))..))))))))))).............(..((.(((((((((((.......)))))))))))))----..). ( -32.00)
>DroEre_CAF1 3410 112 + 1
CAGAUAAACUAUACACGUAAUAGAAAGAGAUGGAACAUCUGUAGAUACUCUUGUUCG-UUCGUAUAAAAACCAU-CUGGUUCACAGAUA-----AAUUUCAAUAUGUGUCUG-GGCAAAC
........(((.(((((((...(((..((((((((((...((....))...)))))(-((........))))))-))..)))...((..-----....))..))))))).))-)...... ( -22.70)
>DroYak_CAF1 2625 103 + 1
CAGAUAAACUGUGCACGUAAUAGAAAGAGAUGGAGCAUCUUUAGAUACACUUGCUCG-CUCUGAUGAAAGUCAU-UUG----------A-----CAUUCUUUUAUGUGUGUGUGGCAAGC
..........(..(((((((.((((((((...(((((..............))))).-))))(((....)))..-...----------.-----..)))).)))))))..)......... ( -25.54)
>consensus
CAGAUAAUCUAUACACGUAAUAGAAAGAGAUGGAGCAUCUGUAGAUACACUUGCUCUUCUUUGAUUAAAACUAU_CUGGCUCACAGAUAGAAA_CAUUCUUUUAUGUGUGGU_GG_UGGU
...........(((((((((.(((((((((.((((((..(((....)))..))))))))))).............(((.....)))..........)))).))))))))).......... (-18.06 = -20.06 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:49 2006