Locus 6228

Sequence ID X_DroMel_CAF1
Location 15,829,630 – 15,829,724
Length 94
Max. P 0.998342
window10147

overview

Window 7

Location 15,829,630 – 15,829,724
Length 94
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.06
Mean single sequence MFE -20.92
Consensus MFE -19.60
Energy contribution -19.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.94
SVM decision value 3.07
SVM RNA-class probability 0.998342
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15829630 94 - 22224390
ACCCGCAAAUGUAGGUAAAUGUAUUAAAAUAUAUUUAUACACAGCUGCGGUCAAAAUAAUAGCUCUGAAACUUGUGCCUCC-----UCCACUCGUUGUG
..(((((..(((..((((((((((....))))))))))..)))..)))))..................(((..(((.....-----..)))..)))... ( -20.60)
>DroSec_CAF1 1750 94 - 1
ACCCGCAAAUGUAGGUAAAUGUAUUAAAAUAUAUUUAUACACAGCUGCGGUCAAAAUAAUAGCCCUGAAACUUGUGCCUCC-----UCCACUCGUUUUG
..(((((..(((..((((((((((....))))))))))..)))..)))))................(((((..(((.....-----..)))..))))). ( -22.70)
>DroSim_CAF1 1749 94 - 1
ACCCGCAAAUGUAGGUAAAUGUAUUAAAAUAUAUUUAUACACAGCUGCGGUCAAAAUAAUAGCCCUGAAACUUGUGCCUCC-----UCCACUCGUUGUG
..(((((..(((..((((((((((....))))))))))..)))..)))))..................(((..(((.....-----..)))..)))... ( -20.60)
>DroEre_CAF1 2485 91 - 1
ACCCGCAAAUGUAGGUAAAUGUAUUAAAAUAUAUUUAUACACAGCUGCGGUCAAAAUAAUAGCCUUGAAACUUGUGCCU--------UCACUCGUUGUG
..(((((..(((..((((((((((....))))))))))..)))..)))))........(((((..((((.........)--------)))...))))). ( -20.90)
>DroYak_CAF1 1716 99 - 1
ACCCGCAAAUGUAGGUAAAUGUAUUAAAAUAUAUUUAUACACAGCUGCGGUCAAAAUAAAAGCCCUGAAACUUGUGCCUUCUCACCUUCACUCGUUGUG
..(((((..(((..((((((((((....))))))))))..)))..)))))..........(((..((((....(((......))).))))...)))... ( -19.80)
>consensus
ACCCGCAAAUGUAGGUAAAUGUAUUAAAAUAUAUUUAUACACAGCUGCGGUCAAAAUAAUAGCCCUGAAACUUGUGCCUCC_____UCCACUCGUUGUG
..(((((..(((..((((((((((....))))))))))..)))..)))))..................(((..(((............)))..)))... (-19.60 = -19.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:48 2006