Locus 6227

Sequence ID X_DroMel_CAF1
Location 15,829,198 – 15,829,290
Length 92
Max. P 0.630708
window10146

overview

Window 6

Location 15,829,198 – 15,829,290
Length 92
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 76.57
Mean single sequence MFE -18.11
Consensus MFE -10.14
Energy contribution -10.38
Covariance contribution 0.24
Combinations/Pair 1.14
Mean z-score -1.75
Structure conservation index 0.56
SVM decision value 0.20
SVM RNA-class probability 0.630708
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15829198 92 - 22224390
AAAAGCAGGAGACUGUGUCAAUUAAAAAACCAUAUCAG-------CUUAUUUACUUUCU----UUUUUGAUUUA-AGCAGGCAAAGUUUUUUCUGCCAACCAAA
....((((....)))).....................(-------((((.......((.----.....))..))-))).((((.((....)).))))....... ( -15.80)
>DroSec_CAF1 1307 101 - 1
AAAAGCAGGAGACU--GCCAAUUAGAAAACCAUAUCAGCAUCAUGCUCAUUUCCUUUCCUUU-UUUUUGAUUUAAAGCAGGCAAAGUUUUUUCUGCCAACCAAA
....((((....))--))....(((((((.......(((.....)))......(((((((.(-(((.......)))).))).))))..)))))))......... ( -18.40)
>DroSim_CAF1 1304 104 - 1
AAAAGCAGGAGACUGUGCCAAUUAUAAAACCAUAUCAGCAUCAUGCUCAUUUCCUUUCUUUUUUUUUUGAUUUAAAGCAGGCAAAGUUUUUUCUGCCAACCAAA
....((((((((((.((((.................(((.....)))......((((...((......))...))))..)))).))))..))))))........ ( -17.80)
>DroEre_CAF1 2069 92 - 1
AUUAGCAGGAGACUGCGCCAAUCAGAAAACCAUAUCAUCACCAUGCU---------UCAUUU-UUUUUUUUUUAUAGCAGGCAAUGG--UUUCCGCCAACCAAA
....((((....))))(((.....((........)).......((((---------......-............)))))))..(((--((......))))).. ( -19.97)
>DroYak_CAF1 1316 86 - 1
AAUAGCAGGAGACUGCGCCAAUCCGAAAACCAUAUAAUUUUCAUGCU----------------CUUUUUUUUUAUAGCAGGCAAUGU--UUUCCGCCAACCAAA
....((((....))))(((.....(((((........))))).((((----------------.(........).))))))).....--............... ( -18.60)
>consensus
AAAAGCAGGAGACUGCGCCAAUUAGAAAACCAUAUCAGCAUCAUGCU_AUUU_CUUUCUUUU_UUUUUGAUUUAAAGCAGGCAAAGUUUUUUCUGCCAACCAAA
....((((....))))...............................................................(((............)))....... (-10.14 = -10.38 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:47 2006