Locus 6226

Sequence ID X_DroMel_CAF1
Location 15,827,429 – 15,827,548
Length 119
Max. P 0.542484
window10145

overview

Window 5

Location 15,827,429 – 15,827,548
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -48.08
Consensus MFE -44.79
Energy contribution -45.23
Covariance contribution 0.44
Combinations/Pair 1.08
Mean z-score -1.37
Structure conservation index 0.93
SVM decision value 0.02
SVM RNA-class probability 0.542484
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15827429 119 + 22224390
UUUGUGU-UGCGGCACCAUGGAGGACCCCAAUCGCAUGUUGGCCCACACCGGCGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGAUGAUGGCCAGAAUGCCGGCAGCGAGA
....(((-(((....((((((......)).....(((((((.((......))))))))))))).(((....)))..((((...((((((((......))))))))..))))))))))... ( -50.70)
>DroSec_CAF1 6323 120 + 1
UUUGAGUUUGCUGCAUCAUGGAGGAUCCCAAUCGCAUGUUGGCCCACACCGGCGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGACGAUGGCCAAAAUGCCGGCAGCGAGA
......(((((((((((...(.(((..(((....(((((((.((......))))))))).))).))).)...))).((((...(.((((((......)))))).)..)))))))))))). ( -47.70)
>DroSim_CAF1 6119 120 + 1
UUUGAGUUUGCGGCAUCAUGGAGGAUCCCAAUCGCAUGUUGGCCCACACCGGCGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGACGAUGGCCAGAAUGCCGGCAGCGAGA
......(((((..((((((((......))....((.((((((......))))))))))))))(((((....)))..((((...((((((((......))))))))..)))))).))))). ( -51.60)
>DroYak_CAF1 6115 119 + 1
UUUCA-UUUGUGGCGUCAUGGAGGAUCCCAAUCGCAUGUUGGCCCACACCGGUGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGAUGAUGGACAGAAUGCCGGCAGCGAGA
.....-(((((..(((((((.......(((((.....))))).((((....)))))))))))(((((....)))..((((...((((.(((......))).))))..)))))).))))). ( -42.30)
>consensus
UUUGAGUUUGCGGCAUCAUGGAGGAUCCCAAUCGCAUGUUGGCCCACACCGGCGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGACGAUGGCCAGAAUGCCGGCAGCGAGA
......(((((..((((((((......))....((.((((((......))))))))))))))(((((....)))..((((...((((((((......))))))))..)))))).))))). (-44.79 = -45.23 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:46 2006