Locus 6222

Sequence ID X_DroMel_CAF1
Location 15,820,459 – 15,820,579
Length 120
Max. P 0.582260
window10131

overview

Window 1

Location 15,820,459 – 15,820,579
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.83
Mean single sequence MFE -41.46
Consensus MFE -32.88
Energy contribution -32.64
Covariance contribution -0.24
Combinations/Pair 1.09
Mean z-score -1.53
Structure conservation index 0.79
SVM decision value 0.10
SVM RNA-class probability 0.582260
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15820459 120 - 22224390
CCCGGGCUCUCCAAAAGGCGACUCAGACACCGAAUGCGUCGAUUUCGGCGCUGCCCGCUCUGAAUUUGGCCCUGGUGCGCCAACAACAAACGCUUCCAGUUGCCGAAGUGGCCCAAAAUC
...((((((.((....)).)).(((((...((...((((((....))))))....)).))))).((((((.((((.(((...........)))..))))..))))))...))))...... ( -40.30)
>DroSec_CAF1 3498 120 - 1
CCCGGGCUCUCCAAAAGACGACCCAGAAACCGAAUGCGUCGAUUUCGGCGCUGCCCGCACUGAAUAUGGUCCUGGUGCGCCAACAACAAACGCUUCCAGUUGCCGAAGUGGCCCAAAAUC
...((((...........((((.((.........)).)))).....(((((.(((.(.(((......))).).)))))))).........((((((........))))))))))...... ( -35.50)
>DroSim_CAF1 3603 120 - 1
CCCGGGCUCUCCAAAAGGCGACCCAGACACCGAAUGCGUCGAUUUCGGCGCUGCCCGCACUGAAUAUGGUCCUGGUGCGCCAACAACAAACGCUUCCAGUUGCCGAAGUGGCCCAAAAUC
...((((.........((((..((((..((((...((((((....))))))((....)).......)))).))))..)))).........((((((........))))))))))...... ( -42.40)
>DroEre_CAF1 2297 120 - 1
CCCGGGCUCUUCAAAAGGCGACCCAGACACCGAAUGCGUCGAUUUCGGCGGUGCCCGCACUGAAUAUGGUCCUGGUGCGCCAACAACAAACGCUCCCGGUCGCCGAAGUGGCCCAAAAUU
...(((((((((....(((((((..((...((.....((((....))))((((((((.(((......))).).)).))))).........)).))..))))))))))).)))))...... ( -45.00)
>DroYak_CAF1 2291 120 - 1
CCCGGGCUCUUCAAAAGGCGACCCAGACGUCGAAUGCGUCGAUUUCGGCGGUGCCCGCACUGAAUAUGGUCCUAAUGCGCCAACAACAAACGCUCCCGGUCGCCGAAGUGGCCCAAAAUC
...(((((((((....(((((((..((.(((((.....))))).))(((((((....)))......((((.(....).))))........))))...))))))))))).)))))...... ( -44.10)
>consensus
CCCGGGCUCUCCAAAAGGCGACCCAGACACCGAAUGCGUCGAUUUCGGCGCUGCCCGCACUGAAUAUGGUCCUGGUGCGCCAACAACAAACGCUUCCAGUUGCCGAAGUGGCCCAAAAUC
...(((((..........((((.((.........)).))))((((((((((((...((..((....((((.(....).))))....))...))...))).))))))))))))))...... (-32.88 = -32.64 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:33 2006