Locus 6221

Sequence ID X_DroMel_CAF1
Location 15,820,117 – 15,820,237
Length 120
Max. P 0.999428
window10130

overview

Window 0

Location 15,820,117 – 15,820,237
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -49.46
Consensus MFE -47.06
Energy contribution -47.38
Covariance contribution 0.32
Combinations/Pair 1.08
Mean z-score -2.33
Structure conservation index 0.95
SVM decision value 3.59
SVM RNA-class probability 0.999428
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15820117 120 - 22224390
AUGUCAUCAUCGUCGCUGGCACGCUGACCAACAAAAUGGCACCGGCCCUGCGAAAGGUCUACGACCAAAUGCCCGAGCCACGUUGGGUCAUCUCCAUGGGCAGCUGUGCCAACGGCGGCG
.........((((((.((((((((((.((......((((....(((((.(((...((((...))))....((....))..))).)))))....)))).)))))).)))))).)))))).. ( -47.80)
>DroSec_CAF1 3156 120 - 1
AUGUCAUCAUCGUCGCUGGCACGCUGACCAACAAAAUGGCACCGGCCCUGCGAAAGGUCUACGACCAAAUGCCCGAGCCACGUUGGGUCAUCUCCAUGGGCAGCUGUGCCAACGGCGGUG
.......((((((((.((((((((((.((......((((....(((((.(((...((((...))))....((....))..))).)))))....)))).)))))).)))))).)))))))) ( -51.10)
>DroSim_CAF1 3261 120 - 1
AUGUCAUCAUCGUCGCUGGCACGUUGACCAACAAAAUGGCACCGGCCCUGCGAAAGGUCUACGACCAAAUGCCCGAGCCACGUUGGGUCAUCUCCAUGGGCAGCUGUGCCAACGGCGGUG
.......((((((((.((((((((((.((......((((....(((((.(((...((((...))))....((....))..))).)))))....)))).)))))).)))))).)))))))) ( -48.70)
>DroEre_CAF1 1955 120 - 1
AUGUCAUCAUCGUCGCGGGCACGCUGACCAACAAAAUGGCACCGGCUCUGCGAAAGGUCUACGAUCAAAUGCCUGAGCCACGUUGGGUCAUCUCCAUGGGCAGCUGUGCCAACGGCGGUG
.......((((((((..(((((((((.(((.....(((((.(((((((.(((...((((...))))...)))..))))).....))))))).....))).)))).)))))..)))))))) ( -50.50)
>DroYak_CAF1 1949 120 - 1
AUGUCAUCAUCGUCGCGGGCACGCUGACCAACAAAAUGGCACCGGCCCUGCGAAAGGUGUACGACCAAAUGCCCGAGCCACGUUGGGUCAUCUCCAUGGGCAGCUGUGCCAACGGCGGUG
.......((((((((..(((((((((.((......((((....(((((.(((...(((.....)))....((....))..))).)))))....)))).)))))).)))))..)))))))) ( -49.20)
>consensus
AUGUCAUCAUCGUCGCUGGCACGCUGACCAACAAAAUGGCACCGGCCCUGCGAAAGGUCUACGACCAAAUGCCCGAGCCACGUUGGGUCAUCUCCAUGGGCAGCUGUGCCAACGGCGGUG
.......((((((((.((((((((((.((......((((....(((((.(((...((((...))))....((....))..))).)))))....)))).)))))).)))))).)))))))) (-47.06 = -47.38 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:32 2006