Locus 622

Sequence ID X_DroMel_CAF1
Location 1,729,725 – 1,729,831
Length 106
Max. P 0.836049
window1006

overview

Window 6

Location 1,729,725 – 1,729,831
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 84.25
Mean single sequence MFE -28.98
Consensus MFE -17.20
Energy contribution -17.96
Covariance contribution 0.76
Combinations/Pair 1.21
Mean z-score -2.63
Structure conservation index 0.59
SVM decision value 0.73
SVM RNA-class probability 0.836049
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1729725 106 + 22224390
UUCCGCUGAAUAAGUGCGGUAUUUAAAUACUGCGA-UUUGGUAUUUGACAUACUAGGUUAGCGGGUAUAUAAAUACCGCGCAAGACCAUUUAGAAUUCAACUAUCGA
.....((((((..((((((((((((.(((((((((-((((((((.....)))))))))).)).))))).))))))))))))......)))))).............. ( -33.00)
>DroSec_CAF1 976 106 + 1
UUCCGCUGAAUAAGUGCAGUAUUUAAAUACUGCGC-UUUGGUAUUUGGCAGACUACGUUAACGGGUAUAUAAAUACCACGCAAGACCAUUUAGAAUUCAACUAUCGA
.....(((((((((((((((((....)))))))))-))(((((((((....(((.((....)))))...)))))))))(....)...)))))).............. ( -29.80)
>DroSim_CAF1 1176 106 + 1
UUCCGCUGAAUAAGUGCGGUAUUUAAAUACUGCGC-UUUGGUAUUUGGCAGACUAGGUUAACGGGUAUAUAAAUACCACGCAAGACCAUUUAAAAUUCAACUAUCGA
.((.((..((((((((((((((....)))))))))-)....))))..)).))...((((..(((((((....))))).))...)))).................... ( -30.40)
>DroEre_CAF1 1088 107 + 1
UUCCGCUGAAUAAGUGCAGUAUUUAAAUACCGGGAUUUUGGUAUGCGGGUGAUUAGGUUAACUGGUAUAUAAAUACCACGCAAAUACAUUUAGACUUCACUUAAUGA
..........((((((.(((......(((((((....)))))))((((((((((((.....))))).......)))).)))............))).)))))).... ( -22.81)
>DroYak_CAF1 1178 107 + 1
UUCCGCUCAAUGGGUGCAGUAUUUAAAUACUGCGCAGUUGGUAUUCGGGUGAUCCGGUUAAUUGGUAUAUAAAUACCACGCAUCACUAUUUAGACUUUAAUUAAUGA
..(((.(((((..(((((((((....))))))))).)))))....)))(((((.((......((((((....)))))))).)))))..................... ( -28.90)
>consensus
UUCCGCUGAAUAAGUGCAGUAUUUAAAUACUGCGC_UUUGGUAUUUGGCAGACUAGGUUAACGGGUAUAUAAAUACCACGCAAGACCAUUUAGAAUUCAACUAUCGA
....((.......(((((((((....)))))))))...(((((((((....(((.(.....).)))...))))))))).)).......................... (-17.20 = -17.96 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:38 2006