Locus 6219

Sequence ID X_DroMel_CAF1
Location 15,816,716 – 15,816,826
Length 110
Max. P 0.831973
window10128

overview

Window 8

Location 15,816,716 – 15,816,826
Length 110
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 94.22
Mean single sequence MFE -51.00
Consensus MFE -41.85
Energy contribution -41.97
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.85
Structure conservation index 0.82
SVM decision value 0.72
SVM RNA-class probability 0.831973
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15816716 110 + 22224390
CUC--AGUAUGUGCGUGUGUCCAUGUCGG-----AGCAUGCUCCGAACGUGGGUUGCUGGCCAAUUAUCUGGUUGGCAACAGGAUAUUGCAGCGAGUUUGCGUGUCCGCGCAGCCCG
...--....(((((......(((((((((-----((....))))).))))))(((((..((((......))))..))))).((((((.((((.....)))))))))))))))..... ( -50.90)
>DroEre_CAF1 16116 112 + 1
CUCGUAGUAUGUGCGUGUGUCCAUGUCGG-----AGCAUGCUCCGAACGCGGGUUGCUGGCCAAUUAUCUGGUUGGCAACAGGAUAUUGCAGCGAGUUUGCGUGUCCGCGCAGCACG
..........((((.(((((((.((((((-----((....))))).))).))(((((..((((......))))..))))).((((((.((((.....))))))))))))))))))). ( -50.40)
>DroYak_CAF1 17166 117 + 1
CUCGUAGUAUGUGCGUGUGUCCAUGUCGGAGCGGAGCAUGCUCCGAACGCGGGUUGCUGGCCAAUUAUCUGGUUGGCAACAGGAUAUGGCAGCGAGUUUGCGUGUCCGCGCAGCCCG
(((((......(((.(((((((...((((((((.....))))))))......(((((..((((......))))..))))).))))))))))))))).((((((....)))))).... ( -51.70)
>consensus
CUCGUAGUAUGUGCGUGUGUCCAUGUCGG_____AGCAUGCUCCGAACGCGGGUUGCUGGCCAAUUAUCUGGUUGGCAACAGGAUAUUGCAGCGAGUUUGCGUGUCCGCGCAGCCCG
.(((.((((((((((((....))))).........))))))).)))..(((.(((((..((((......))))..))))).((((((.((((.....)))))))))).)))...... (-41.85 = -41.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:30 2006