Locus 6217

Sequence ID X_DroMel_CAF1
Location 15,815,263 – 15,815,383
Length 120
Max. P 0.598697
window10125

overview

Window 5

Location 15,815,263 – 15,815,383
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.42
Mean single sequence MFE -31.04
Consensus MFE -23.36
Energy contribution -23.44
Covariance contribution 0.08
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.75
SVM decision value 0.13
SVM RNA-class probability 0.598697
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15815263 120 + 22224390
CUCGAAGCCAAGCUGAUGCAAUCGACCCAUAUCCUUGGAUCCAGAUUCCAAAAAUCGACUCUUGGCACUACUAAAUAAGCUGGCCUUGCUGGCCACCGACCAUUUCCGGGCCAAACUGUU
.((((......((....))...............(((((.......)))))...))))...(((((..............(((((.....)))))(((........))))))))...... ( -28.50)
>DroSec_CAF1 15570 120 + 1
CUCGAAGCCAAGCUGAUACAAUCGACCCAUAUCCUUGGAUCCAGAUUCCAAAAAUCGACUCUUGGCACUACUAAACAAGCUGGCCUUGCUGGCCACCGACCAUUUCCGGGCCAAAUUGUU
......((((((...........((.(((......))).))..((((.....))))....)))))).......(((((..((((((.(.(((.......)))...).))))))..))))) ( -28.80)
>DroSim_CAF1 18237 120 + 1
CUCGAAGCCAAGCUGAUACAAUCGACCCAUAUCCUUGGAUCCAGAUUCCAAAAAUCGACUCUUGGCACUACUAAACAAGCUGGCCUUGCUGGCCACCGACCAUUUCCGGGCCAAAUUGUU
......((((((...........((.(((......))).))..((((.....))))....)))))).......(((((..((((((.(.(((.......)))...).))))))..))))) ( -28.80)
>DroEre_CAF1 14624 120 + 1
CUCGAAGCCAAGCUGAUACAAUCGACCCAUAUCCUUGGGUCCAGAGUCCAAAAAUCGACUCUUAGCACUACUAAAUAAGCUGGCCUUGCUGGCCACCGACCAUUUCCGGCCAAAAUUGUU
......(((..(((((.......((((((......))))))..(((((........))))))))))............(.(((((.....))))).)..........))).......... ( -35.60)
>DroYak_CAF1 15619 120 + 1
CUCGAAACCAAGUUGAUACAAUCGACCCAUAUCCUUGGUUCCAGAGUCCAAAAAUCGACUCUUGGCACUACUAAAUACGCUGGCCUUGCUGGCCACCGACCAUUUCCGGGCCAAAUUAUU
...(.(((((((..((((...........))))))))))).).(((((........)))))(((((...........((.(((((.....))))).)).((......)))))))...... ( -33.50)
>consensus
CUCGAAGCCAAGCUGAUACAAUCGACCCAUAUCCUUGGAUCCAGAUUCCAAAAAUCGACUCUUGGCACUACUAAAUAAGCUGGCCUUGCUGGCCACCGACCAUUUCCGGGCCAAAUUGUU
.(((((((...))).........((.(((......))).)).............))))...(((((..............(((((.....)))))(((........))))))))...... (-23.36 = -23.44 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:27 2006