Locus 6216

Sequence ID X_DroMel_CAF1
Location 15,815,030 – 15,815,129
Length 99
Max. P 0.811675
window10124

overview

Window 4

Location 15,815,030 – 15,815,129
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.62
Mean single sequence MFE -30.00
Consensus MFE -23.60
Energy contribution -24.63
Covariance contribution 1.03
Combinations/Pair 1.25
Mean z-score -1.32
Structure conservation index 0.79
SVM decision value 0.65
SVM RNA-class probability 0.811675
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15815030 99 - 22224390
--------------------UA-GACAGUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUACGCGAUUCGAGCAUAACCGAUAUAAGUCGUAGGCUAGAUCGACU
--------------------..-....(((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))).....((((...(((.....)))..))))... ( -33.00)
>DroPse_CAF1 110054 120 - 1
UCUCAAGCUUCGUCAAAACUUGGAACAAGUAAAAAUAGGUGGAAGUACUCCACUACUUUGUGUAAAGGGUAUUCUCCGUGAAUCAAGUGUGUUCGAUAUAAACCGUUGCAUGGACCGUGA
..(((.(.((((((((.(((((...))))).......((((((((((((((((......)))....))))))).))).(((((.......)))))......))).))).))))).).))) ( -22.00)
>DroSec_CAF1 15337 99 - 1
--------------------UA-GACAGUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUACGCGAUUCGAGCAUAACCGAUAUAAGUCGUAGACUGGAUCGACU
--------------------..-....(((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))).....((((...((((...))))..))))... ( -34.40)
>DroSim_CAF1 18004 99 - 1
--------------------UA-GACAGUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUACGCGAUUCGAGCAUAACCGAUAUAAGUCGUAGACUGGAUCGACU
--------------------..-....(((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))).....((((...((((...))))..))))... ( -34.40)
>DroEre_CAF1 14391 99 - 1
--------------------UA-GACAAUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUGCGCGAUUCGAGCAUAACCGAUAUAAGUCGAAGACUGGAUCGACU
--------------------..-.....((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))......((((...((((...))))..))))... ( -29.30)
>DroYak_CAF1 15383 99 - 1
--------------------UA-GACAAUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUGAAGGGUAUUUUGCGCGAUUCGAGCAUAACCGAUAUAAGUCGACGACUGGAUCGACU
--------------------..-.....((((((.(((......((((((((((....))))....))))))....)))..))))))......((((...((((...))))..))))... ( -26.90)
>consensus
____________________UA_GACAAUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUACGCGAUUCGAGCAUAACCGAUAUAAGUCGUAGACUGGAUCGACU
...........................(((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))).....((((...((((...))))..))))... (-23.60 = -24.63 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:26 2006