| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,813,845 – 15,813,964 |
| Length | 119 |
| Max. P | 0.551989 |
| Location | 15,813,845 – 15,813,964 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.12 |
| Mean single sequence MFE | -39.73 |
| Consensus MFE | -22.87 |
| Energy contribution | -24.35 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15813845 119 - 22224390 CUGCUGGAGGAUAAGUACAGGUGCCUCAAGGAGAAGUACGUGCGCCUUAAGACGGACGUGAAGCUGUCGCUGGAGCGAAGAAAUCGCCGGCGGGAGGCGCAGAUGGCGCCCCAGCAUAA- .((((((.(........).((((((((..(........).((((((((..(((((.(.....))))))((((..((((.....))))))))..)))))))))).))))))))))))...- ( -50.00) >DroPse_CAF1 108853 117 - 1 UUACUUGAGGACAAAUAUCGUUGUCUCAAAGAAAAAUACUUUAGACUUAAAACGGACGUUAGACUGUCCUUAGAACGACGCAAUCGACGACGCGAGGUAC---UCGCUUUUCAGAAAAAU .....((((((((..((.((((((((.((((.......))))))))........)))).))...))))))))((((((.....))).....(((((...)---))))..)))........ ( -24.40) >DroSim_CAF1 16819 119 - 1 CUGCUGGAGGACAAGUACAGGUGCCUCAAGGAGAAGUAUGUGCGCCUUAAGACGGACGUGAAACUGUCGCUGGAGCGAAGAAAUCGCCGGCGGGAGGCGCAGAUGGCGCCCCAGCACAA- .((((((.(........).((((((((.....))...((.((((((((..(((((........)))))((((..((((.....))))))))..)))))))).))))))))))))))...- ( -49.20) >DroEre_CAF1 13218 119 - 1 CUGCUGGAGGACAAGUACAGGUGCCUCAAGGAGAAGUACGUGCGCCUCAAGACGGACGUGAAGCUGUCGCUGGAGCGAAGGAAUCGCCGGCGGGAGGCGCAGAUGGCGCCCCAACAUAA- .((.(((.(........).((((((((..(........).((((((((..(((((.(.....))))))(((((..(....).....)))))..)))))))))).))))))))).))...- ( -45.80) >DroYak_CAF1 14201 119 - 1 CUGCUGGAGGACAAGUACAGGUGCCUCAAGGAGAAGUACGUGCGCCUCAAGACGGACGUAAAGCUGUCGCUGGAGCGCAGGAAUCGCCGGCGAGAGGCGCAGAUGGCGCCGCAACAAAA- .(((((.....))......((((((((..(........).((((((((..(.(((.((.....(((.(((....))))))....))))).)..)))))))))).)))))))))......- ( -44.70) >DroPer_CAF1 140815 117 - 1 UUACUUGAGGACAAAUAUCGUUGUCUCAAAGAAAAAUACGUAAGACUUAAAACGGACGUUAGACUGUCCUUAGAACGACGCAAUCGACGACGCGAGGUAC---UCGCUUUUCAGAAAAAU ....(((((.((((......))))))))).(((((...(((............(((((......)))))......(((.....))))))..(((((...)---)))))))))........ ( -24.30) >consensus CUGCUGGAGGACAAGUACAGGUGCCUCAAGGAGAAGUACGUGCGCCUUAAGACGGACGUGAAACUGUCGCUGGAGCGAAGAAAUCGCCGGCGGGAGGCGCAGAUGGCGCCCCAGCAAAA_ ((.((.((((.((........)))))).)).)).......((((((((..(((((........)))))(((((..(((.....))))))))..))))))))................... (-22.87 = -24.35 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:25 2006