Locus 6214

Sequence ID X_DroMel_CAF1
Location 15,813,474 – 15,813,582
Length 108
Max. P 0.836855
window10122

overview

Window 2

Location 15,813,474 – 15,813,582
Length 108
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 89.25
Mean single sequence MFE -42.43
Consensus MFE -33.69
Energy contribution -33.88
Covariance contribution 0.19
Combinations/Pair 1.23
Mean z-score -1.93
Structure conservation index 0.79
SVM decision value 0.74
SVM RNA-class probability 0.836855
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15813474 108 - 22224390
AUAAUGGUCGUUAUGGACCAUUUCUGAAGUCCGCCAGCGGAGUACUCUCCGCCAGAACGGCCAGUGAUAAUGGCAACUCUUCGAGGGAUGG-AGUGGUGGCUGCGGUGG
..(((((((......))))))).(((.((.(((((.((((((....)))))).......((((.......)))).(((((((....)).))-)))))))))).)))... ( -40.70)
>DroSim_CAF1 16447 109 - 1
AUAAUGGUCGUUAUGGGCCAUUUCUCAAAUCCGCCAGUGGAGUACUCUCCGCCAGAACGGCCAGUGAUAAUGGCAACUCCUCGAGAGAUGGGGGUGGUGGGUGCUGUGG
..(((((((......))))))).(.((.((((((((((((((....)))))).......((((.......))))..((((((....)).)))).))))))))..)).). ( -42.40)
>DroEre_CAF1 12847 108 - 1
AUAAUGGUCGCUACGGUCCAUUUCUCAAAUCCGCCAGCGGAGUACUCUCCGCCAGAACGGCCAGUGAUAAUGGCAACUCAUCGAGGGACGG-GCUAGUGGCUGCCGUGG
...(((((.((((((((((.(..(((..........((((((....))))))..((...((((.......))))...))...)))..).))-))).))))).))))).. ( -45.20)
>DroYak_CAF1 13830 108 - 1
AUAAUGGUCGCUAUGGCCCAUUCCUCAAAUCCGCCAGCGGGGUAAUCUCCGCCAGAACGGCCAGUGAUAAUGGCAACUCAUCGAGGGACGG-ACUAGUGGGCGCCGUGG
...((((.((((.(((.((.((((((..........((((((....))))))..((...((((.......))))...))...)))))).))-.)))...)))))))).. ( -41.40)
>consensus
AUAAUGGUCGCUAUGGACCAUUUCUCAAAUCCGCCAGCGGAGUACUCUCCGCCAGAACGGCCAGUGAUAAUGGCAACUCAUCGAGGGACGG_ACUAGUGGCUGCCGUGG
...(((((.(((((...(((((((((..........((((((....))))))..((...((((.......))))...))...))))))))).....))))).))))).. (-33.69 = -33.88 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:24 2006