Locus 6213

Sequence ID X_DroMel_CAF1
Location 15,812,962 – 15,813,082
Length 120
Max. P 0.586414
window10121

overview

Window 1

Location 15,812,962 – 15,813,082
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -40.80
Consensus MFE -26.35
Energy contribution -25.22
Covariance contribution -1.13
Combinations/Pair 1.33
Mean z-score -1.43
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.586414
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15812962 120 + 22224390
CAGGGAACGAGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUUAGCUGAUCAAUGGAAUGUUUCGGCGAUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC
.(((((((((.((.(((((((......))))))).)).)).)))))))....(((..((((....))))...))).....(((((..((((((((.......))))).)))))))).... ( -45.10)
>DroPse_CAF1 107998 120 + 1
CAAAGCACGUGUGCGAUGUAGGUUUACUUCCAUCUCGGUUAAUUCUUUUUCCUCUUGGAUAUGCUGGUCCAGCCACUGCUUAGGUACUAAAGGGGGAGUUUUGAUCCGUUGUUUUAUAUC
.((((((((...(.((((.(((....))).)))).)((((((..(((...((((((((((......)))).(((........)))....)))))))))..)))))))).))))))..... ( -28.70)
>DroSim_CAF1 15935 120 + 1
AAGGGAACGAGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUUAGCUGAUCAAUGGAGUGUUUCGGCGAUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC
.(((((((((.((.(((((((......))))))).)).)).)))))))...((((..((((....))))...))))....(((((..((((((((.......))))).)))))))).... ( -47.70)
>DroEre_CAF1 12335 120 + 1
CAGGGAACGAGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUUAGCUGAUCAAUGGAGUGCUUCGGCGUUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC
.(((((((((.((.(((((((......))))))).)).)).)))))))...((((..((((....))))...))))....(((((..((((((((.......))))).)))))))).... ( -47.70)
>DroYak_CAF1 13318 120 + 1
CAGGGAACGUGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUCAGCUGAUCGAUGGAGUGUUUCGGCGAUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC
.(((((((...((.(((((((......))))))).))....)))))))...(((((.((((....)))).).))))....(((((..((((((((.......))))).)))))))).... ( -46.20)
>DroPer_CAF1 139951 120 + 1
CAAAGCACGUGUGCGAUGUAGGUUUACUUCCAUCUCGGUUAAUUCUUUUUCCUCUUGGAUAUGCUGGUCCAGCCACUGCUUAGGUAACAAAGGGGGAGUCUUGAUCCGCUGUUUUAUAUC
.((((((.(((.(.((((.(((....))).)))).)((((((.....(((((((((((((......)))).(((........)))....)))))))))..)))))))))))))))..... ( -29.40)
>consensus
CAGGGAACGAGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUUAGCUGAUCAAUGGAGUGCUUCGGCGAUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC
.(((((((...((.(((((((......))))))).))....))))))).(((....))).....................(((((.....((((((........)))))).))))).... (-26.35 = -25.22 +  -1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:23 2006