Locus 6210

Sequence ID X_DroMel_CAF1
Location 15,809,320 – 15,809,440
Length 120
Max. P 0.806129
window10116

overview

Window 6

Location 15,809,320 – 15,809,440
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.50
Mean single sequence MFE -31.74
Consensus MFE -23.44
Energy contribution -23.88
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -2.04
Structure conservation index 0.74
SVM decision value 0.63
SVM RNA-class probability 0.806129
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15809320 120 - 22224390
ACGAUACCAACCUGAUAAUAUUGUUGUGUUUUUCCACAAUACGUUUGAGUCGCUCCAGCUGAAUGCUCUCGGCCAAUUCCGCAUUGGAACCCGCAAAUAAACCUGCGAUUCGUUGGUGUA
...((((((((..........(((((((......))))))).....(((((((....(((((......)))))...((((.....))))...............))))))))))))))). ( -34.40)
>DroSec_CAF1 11228 120 - 1
ACAAUACCAACCUGAUAAUAUUGUUGUGUUUUUCCACAAUACAUUUAAGUCGCUCCAGCUGAAUGUUCUCGGCCAAUUCCUCGUUGGAACCCGCAAAUAGUCAUGCAAUUCGUUGGUGUA
...((((((((..(((.....(((((((......))))))).......)))......(((((.((((..((((((((.....)))))...)))..)))).))).)).....)))))))). ( -28.70)
>DroSim_CAF1 11115 120 - 1
ACAAUACCAACCUGAUAAUAUUGUUGUGUUUUUCCACAAUACAUUUAAGUCGCUCCAGCUGAAUGUUCUCGGCCAAUUCCUCGUUGGAACCCGCAAAUAUUCCUGCAAUUCGUUGGUGUA
...((((((((..(((.....(((((((......))))))).......)))......((.(((((((..((((((((.....)))))...)))..)))))))..)).....)))))))). ( -30.70)
>DroEre_CAF1 9617 119 - 1
-CAAUACCAACUUGAUAAUAUUAUUGUGCUUUUCCACAAUACGUUUGAGGCGCUCCAGCUGAAUGGUCUCGGCCAAAUCCGCAUUGGAACCCCUGAAUAGUCCGGCAAUUCGUUGGUGUA
-..((((((((..........(((((((......)))))))......(((.(.((((((.((.((((....))))..)).))..)))).).)))((((.(.....).)))))))))))). ( -31.30)
>DroYak_CAF1 10463 120 - 1
ACAAUACCAACUCGAUAACAGUGUUGUGUUUCUCCACAAUACGUUUGAUGCGCUCCAGCUGUAUGUUCUCGCCCAAUUCCGCACUGGAAUCCGCAAAUAGUGCUGCAAUUCGUUGGUGUA
...((((((((.(((.(((.((((((((......)))))))).....((((((....)).))))))).))).........((((((...........))))))........)))))))). ( -33.60)
>consensus
ACAAUACCAACCUGAUAAUAUUGUUGUGUUUUUCCACAAUACGUUUGAGUCGCUCCAGCUGAAUGUUCUCGGCCAAUUCCGCAUUGGAACCCGCAAAUAGUCCUGCAAUUCGUUGGUGUA
...((((((((..........(((((((......)))))))..........((....(((((......)))))...((((.....))))...............)).....)))))))). (-23.44 = -23.88 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:18 2006